BAC Information

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BAC

Clone NameMSMg01-055B21
Chromosome5 (Build37)
Map Location 8,106,044 - 8,106,570
singlet/doubletsinglet
Overlap geneAdam22
Upstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4, Sri, LOC433840
Downstream geneDbf4, Slc25a40, Gm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055B21.T7 (MSMg01no055_b21.b1)MSMg01-055B21.TJ (MSMg01no055_b21.g1)
ACCAG282874AG282875
length704751
length of high quality
(start - end)
614 (76 - 689)528 (76 - 603)
definitionCHROMAT_FILE: MSMg01no055_b21.b1 PHD_FILE: MSMg01no055_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:27 2005CHROMAT_FILE: MSMg01no055_b21.g1 PHD_FILE: MSMg01no055_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAACTTACCCATCAGGGAATACAAATCAAAATGATCCTGGGATTCC
ACCTTACACCAATAAGAACGGTTAAGCTCAAAACCTCAGGTGACAACACA
TGTTGGCAAGGATGTGGAGTATGGGCCTGTGTACCAGAGACTTTCCACAG
AGATCGCTGGCCCGGCCTGGTGTGTGAGTTCCCGCAAAGGGAAGCAAGTG
CTGGCAGGGAGGGGAAGTCACTTCTGCTGCTTCTGCTGCTGTGGTTGGCT
CTACCTCCTTCTCTGCCATGCCATCTGGTTACTGGGTTACTCCACACTGC
CCTGCATTGAGTCTGGTCAAGCTGGGCTGATAAGAGACCTACTAGCCAGT
GAGGAGTGTGGCAGAGTTTGAGGTGACGCTCCGAGAGAGCAGGCCTCTTC
CCAAGTGTTACAGCTCTTAGAACAAAAGGCTTGGATGATGGAGTATTGCA
TGTGGAAAGGCTTGGTGCTGTTCCTACATGACTGATGGCCACACACCTCT
CCTACAGGGGCTGTGCTGGCTGTAACTTCGACAGGAGACATGATTGAACA
CCTTGTGTCCTGTGCAGGTGGAAACTGCCACCCACCAGGTCACCGGGCAT
TTCAGAGCTTTGCTTAACTGGAGACCAGGCTGTCTGTGCACAGCCTACCA
CCCN
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCATAAAGATACTTGAATGCATAAC
GTCCACACTTTGTTGCGTTCTCCTTTGAAATTGATTACACCGAACATCAT
TGTGTTTCATCAACCATGGTATCTGAACAGCTCTCACTACACTTATTATC
TGCTCCTAATCTGCCAGCGGCATGCAGTGGGACAGAGGAAACCTTAAGCA
GGAAGCTGGGCAAATACACTGAACCTATAACTGAATAGTATGTGATGTGT
AGTACCTGGCGTGGGTTTGTTTATCCGTTTCTGAGATAACAGTTTAGGTT
TTGGTAGTGCAAGTAGAATTAACAGTCTTAGAAATGTGAGAAGAGAAATG
TCCATCTCCATACTATGTCGACTTAGACAAAACCATAATTGTTATAAAAA
TCGTGGATGCTCTGTCTCTTTTTGTACTGTTTGCTAAATGGAGACAATAA
GGCTATGCTAGATAGGTGTTTGGCTTTCTATGGGCTTTACAGGAGACAAA
AGCTCATAGATTCTAACTATGCAAATTTCTTCTTTAGCTACCTTTATAAT
CATCAGATCACACAAAACTACTTTCTTACATAAAGAGACCTGATTCACAA
GCGGAAAACATCTCCTTGATAGCACAAATTGATAAATTTTGTAAGTTACG
AAAATTATTACTACCCCACAGTACAAAAATAAAATTCTCTCTATATTGTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_b21.g1 MSMg01no055_b21.g1 CHROMAT_FILE:
MSMg01no055_b21.g1 PHD_FILE: MSMg01no055_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:27 2005
         (528 letters)



>mm_chr5_8105844_8106773
          Length = 930

 Score =  938 bits (485), Expect = 0.0
 Identities = 516/527 (97%), Gaps = 2/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccataaagatacttgaatgcataacgtccacactttgttgcgttctcctttgaaattgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ccataaagatacttgaatgcataacgtccacactttgttgcgttctcctttgaaaatgat 260

                                                                       
Query: 61  tacaccgaacatcattgtgtttcatcaaccatggtatctgaacagctctcactacactta 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacggaacatcattgtgtttcatcaaccatggtatctgaacagctctcactacactta 320

                                                                       
Query: 121 ttatctgctcctaatctgccagcggcatgcagtgggacagaggaaaccttaagcaggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatctgctcctaatctgccagcggcatgcagtgggacagaggaaaccttaagcaggaag 380

                                                                       
Query: 181 ctgggcaaatacactgaacctataactgaatagtatgtgatgtgtagtacctggcgtggg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ctgggcaaatacactgaacctataactgaatagtatgtgatgtgtagtacctggtgtggg 440

                                                                       
Query: 241 tttgtttatccgtttctgagataacagtttaggttttggtagtgcaagtagaattaacag 300
           |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 441 tttgtttatccgtttctgagataacagtttagtttttggtagagcaagtagaattaacag 500

                                                                       
Query: 301 tcttagaaatgtgagaagagaaatgtccatctccatactatgtcgacttagacaaaacca 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tcttagaaatgtgagaagagaaatgtccatctccatactatgccgacttagacaaaacca 560

                                                                       
Query: 361 taattgttataaaaatcgtggatgctctgtctctttttgtactgtttgctaaatggagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taattgttataaaaatcgtggatgctctgtctctttttgtactgtttgctaaatggagac 620

                                                                       
Query: 421 aataaggctatgctagataggtgtttggctttctatgggctttacaggagaca--aaagc 478
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 621 aataaggctacgctagataggtgtttggctttctatgggctttacaggagacataaaagc 680

                                                          
Query: 479 tcatagattctaactatgcaaatttcttctttagctacctttataat 525
           ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 tcagagattctaactatgcaaatttcttctttagctacttttataat 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 930
Length adjustment: 10
Effective length of query: 518
Effective length of database: 920
Effective search space:   476560
Effective search space used:   476560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)