Query= MSMg01no055_f19.b1 MSMg01no055_f19.b1 CHROMAT_FILE:
MSMg01no055_f19.b1 PHD_FILE: MSMg01no055_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:45 2005
(630 letters)
>mm_chr5_31343623_31344652
Length = 1030
Score = 1181 bits (611), Expect = 0.0
Identities = 623/627 (99%)
Strand = Plus / Plus
Query: 4 ggaattccatcccatctcctatctgtctagcctgtcccttctcttccttctcccatcttc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatcccatctcctatctgtctagcctgtcccttctcttccttctcccatcttc 263
Query: 64 ctgccattaccccaggaattactgaaattaccagtgcagtgtagatgttgcagacaattc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgccattaccccaggaattactgaaattaccagtgcagtgtagatgttgcagacaattc 323
Query: 124 ctagggccagcactgacagccataaatcaaatccagtcactgtaaacagaaagtcacact 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctagggccagcactgacagccataaatcaaatccagtcactgtaaacagaaagtcacact 383
Query: 184 cctatctctgcaagctcttccagagaagccctggtaagggaagctactggagacaggcag 243
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 cctatctctgcaagctcttccagagaagacctggtaagggaagctactggagacaggcag 443
Query: 244 ctgtggtgctacacatctctaatcccagcattcagcgagacagagacatgtggctctctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtggtgctacacatctctaatcccagcattcagcgagacagagacatgtggctctctg 503
Query: 304 tgagtctagcctggtctatataccacggtgccaggaccgctagggctacatagagacctt 363
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 504 tgagtctagcctggtctatatagcagggtgccaggaccgctagggctacatagagacctt 563
Query: 364 gtctcaaaaacaaacaaacactcacctataaaagaagcaattattcattaaagatgaaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtctcaaaaacaaacaaacactcacctataaaagaagcaattattcattaaagatgaaat 623
Query: 424 aaatcattcctcagtggaaggaaaagcattctcagagcgccactgaaatactgagaacca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaatcattcctcagtggaaggaaaagcattctcagagcgccactgaaatactgagaacca 683
Query: 484 gctcaggtgtggcatggcaatgtctgatcagcttttgatagaggtgacccaagtctacct 543
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 684 gctcaggtgtggcatggcaatgtctgatcagcttttgatggaggtgacccaagtctacct 743
Query: 544 ctccctctgctagagactgagccaagagcccagcaaatgggtcaactttctcaaggtcag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctccctctgctagagactgagccaagagcccagcaaatgggtcaactttctcaaggtcag 803
Query: 604 attgctgctctctaccctgtctgccct 630
|||||||||||||||||||||||||||
Sbjct: 804 attgctgctctctaccctgtctgccct 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_f19.g1 MSMg01no055_f19.g1 CHROMAT_FILE:
MSMg01no055_f19.g1 PHD_FILE: MSMg01no055_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:45 2005
(496 letters)
>mm_chr5_31460121_31461016
Length = 896
Score = 915 bits (473), Expect = 0.0
Identities = 491/497 (98%), Gaps = 1/497 (0%)
Strand = Plus / Minus
Query: 1 cacttctgtttcccagagttccttccacaatctgcttcgtagagaaccaatgcttcgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cacttctgtttcccagagttccttccacaatctgcttcgtagagaaccaatgcttcgcat 460
Query: 61 gcaggaaggagagggacattctcagctttgcctggacaggctgcaacttgaagctattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gcaggaaggagagggacattctcagctttgcctggacaggctgcaacttgaagctattca 400
Query: 121 caaggtgagaaccttgtcttttatctctcccaccctctacaatcagtgaaataaaatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caaggtgagaaccttgtcttttatctctcccaccctctacaatcagtgaaataaaatgtt 340
Query: 181 taaaggcagctgcaatggctggagggaaagcagccttgactctctcctgggtcatggtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 taaaggcagctgcaatggctggagggaaagcagccttgactctctcctgggtcatggtat 280
Query: 241 atagatctcattcattgactgtctcacatggtctagtcctcctgattgtaactttatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 279 atagatctcattcattgactgtctcacatggtctagtcctcctgattgtggctttatttg 220
Query: 301 gctggttcgttttgggtggttttgatacagggtcagtagctgttggggagctcatcttgt 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gttggttcgttttgggtggttttgatacagggtcagtagctgttggggagctcatcttgt 160
Query: 361 agactaggttggtgtcagactcac-agagatctgcctgcttctgccttctgattgctgag 419
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 159 agactaggttggtgtcagactcacaagagatccgcctgcttctgccttctgattgctgag 100
Query: 420 atgaaaggtgtggtgatgcgtttttaaagctcatgcaggtgcactctgaggctctgtggg 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 atgaaaggtgtggtgatgtgtttttaaagctcatgcaggtgcactctgaggctctgtggg 40
Query: 480 ttttctgctctctccac 496
|||||||||||||||||
Sbjct: 39 ttttctgctctctccac 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
