XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTGTGTACATTCCTCAGAACATTGGAAATAGGTCTACCTGAAGACCC
AGATGTACCACTCTTGCGCATATACCAAAAAGATGTCCCACCATGCCCCA
AGGCACATGTTTTTCTATGTTCATAACAGCCTTGTTTATTATAGCTAGAA
GCTGCAAATAACCCAGATGTCCCAAAACAGAAGAATGGATACAGAAAATG
TGGCTCATTTACACAATGAAATACTACTCAGCTATTAAGAAACGAAGACA
TCCTGAGTTTTTCAGGCAAATGGATGTAACTCAGAAATATCATTCTGAGT
AAGGCAACTCAGAACCAAAAGGACATGCATGGTATATCCTCATTAATAAG
TGGATATTAACCAAAAAAGTGCAGAACACCCTGTATTCATTCCGCAGAAC
TTAAAACAGTTATCAAGCCACAACTCCCAAGTGAGGACACCTCTTTCCCA
CTTGGAAGGGAGAAAAAGAAATCACAGAGCGAGTGGGGTTGGTGGGAGGT
TCTCAAGTGTCGATGTGCACCATGAGTACTACAGATTAACCCGATCCCCC
CCTGCCCACAAAAACAAAAATCTGAATCCCCTGAGGCACTTCTATAAATC
ATGATTACCTGGTATCCTTATGAAATTATGGCCTTTGGGGTACCTCCCAA
TAATTGTATCACATACCCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAGCAATTTAGTAAATTTGA
TTAATGTCTCCTTACATCACATAGATATTTTCTACAGTGCATATAAGCAC
ATATATTTTAGAATATACTGAAACTTAAAAATGTAAATTAAAAAAAAAAC
AAAAACCTCTACCAACTTCAAATTAAAAAACACATTTATTTTAGAATTCT
CTAGGATACTCGTAATTTCCTGTATTCCCTACTCATGATGTCCATATGTT
AGCATCTTACAAATTTGTATGACAATAATGAGGAGAAAATAAAATTTGTA
AGGAAAAAAAAAAGACAGTTTTGTCTTAGACTACTTATTAACAAATGCCT
GGGCCACAAACTGTGGCTTATTCCCAGAATAACGTATTTAACACATTCAA
AATATTTTATGTTTTGTACATTTTTAGTTACCCCTTTATCTATTTACTTA
GCATCTTCCTAAATATCTCCCTTAGCATATGTGCCAGCATCTGTCCCTGA
ATCTGTTTATTCTCCTAATATTTCATAGAATACTCTCTTTTTGAAAAGTC
TCACCTCATATTTTCTTCCTCAGCTCATTTGTCATACACATTATTTAATT
GACAGATGATGTTTATAAGAGAGTCTCAAAATTTGGGGCACTAATAACAA

Query= MSMg01no055_h11.g1 MSMg01no055_h11.g1 CHROMAT_FILE:
MSMg01no055_h11.g1 PHD_FILE: MSMg01no055_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:53 2005
         (617 letters)



>mm_chr5_126312539_126313554
          Length = 1016

 Score =  246 bits (127), Expect = 5e-69
 Identities = 466/619 (75%), Gaps = 89/619 (14%)
 Strand = Plus / Plus

                                                                       
Query: 31  tctccttacatcacata-gatattttctacagt-gcat---ataagcacatatattttag 85
           ||||||||||||||| | || ||||||||| || | ||   |||| ||||||||||||||
Sbjct: 234 tctccttacatcaca-aggacattttctactgtag-atataataaacacatatattttag 291

                                                                       
Query: 86  aatatactgaaactt-aaaaatgtaaattaaaaaaaaaacaaaaacctctaccaacttca 144
           ||||||| ||||||| ||||||| ||||  ||||      ||| ||||||||| ||||  
Sbjct: 292 aatatacagaaacttgaaaaatggaaatggaaaa------aaatacctctaccgactttg 345

                                                                       
Query: 145 aattaaaaaacacatttattttagaattctctaggatactcgtaatttcctgtattccct 204
           |||||||||||||||||||||||||||||||||||||| | | ||||||| | || ||||
Sbjct: 346 aattaaaaaacacatttattttagaattctctaggatagttgcaatttcccgcataccct 405

                                                                       
Query: 205 actcatgatgtccatatgttagcatcttaca-aatttgtatgacaataatgaggagaaaa 263
           || |||||| ||||||| ||||||||||||| |||  |||||| |||||| |||||||| 
Sbjct: 406 acacatgatttccatatattagcatcttacataatc-gtatgaaaataattaggagaaat 464

                                                                       
Query: 264 taaaatttgtaaggaaaaaaaaaagacagtttt---------gt--ct--t--------- 301
           |||  |||||||    ||||||||  | |||||         ||  ||  |         
Sbjct: 465 taacctttgtaa----aaaaaaaatcc-gtttttccttccctgttcctgctccctgaatg 519

                                                                       
Query: 302 ---------agactacttattaacaaatgcctgggccacaaactgtggcttattcccaga 352
                    |||||| |||||||||||||||| |||||||| || |||||  ||||  ||
Sbjct: 520 acgactctgagactatttattaacaaatgcctaggccacaagctttggctccttcctgga 579

                                                                       
Query: 353 ataacgtatttaacacattcaaaatattttatgttttgtacatttttagttacc-c-ctt 410
            |||| |||||||| |||||||| |||| || || || |||||  |||| |||| | |||
Sbjct: 580 ctaacttatttaacccattcaaactattctaagtcttctacatggttagatacctctctt 639

                                                                       
Query: 411 t-atc-tatttacttagcatcttcctaaatatctcccttagcatatgtgccagcatctgt 468
           | ||| | ||  |||||||||||||| || |||||||||||||| ||  ||||||||| |
Sbjct: 640 tcatcctcttc-cttagcatcttcctcaacatctcccttagcatctgccccagcatcttt 698

                                                                       
Query: 469 ccctgaatctg--tttattctcctaatatttcatagaatact-ctctttttgaaaagt-- 523
           ||||||||||   |||||||||      ||         ||| | |         |||  
Sbjct: 699 ccctgaatctccttttattctc------tt---------actgc-c---------agtgt 733

                                                                       
Query: 524 ctcacctcatattttctt-cctcagctcatttgtcatacacattatttaattgacagatg 582
           |||||||| |||||| || |||||||||||| |||||| || |||||| |||||||| ||
Sbjct: 734 ctcacctcctatttt-ttgcctcagctcattggtcatagactttattttattgacaggtg 792

                              
Query: 583 atgtttataagagagtctc 601
           ||| |||||||||| ||||
Sbjct: 793 atgcttataagagattctc 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1016
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1006
Effective search space:   610642
Effective search space used:   610642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)