BAC Information

Click to search

BAC

Clone NameMSMg01-055J09
Chromosome5 (Build37)
Map Location 49,220,773 - 49,221,061
singlet/doubletsinglet
Overlap geneKcnip4
Upstream geneLOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055J09.T7 (MSMg01no055_j09.b1)MSMg01-055J09.TJ (MSMg01no055_j09.g1)
ACCAG283217AG283218
length714726
length of high quality
(start - end)
290 (69 - 358)219 (104 - 322)
definitionCHROMAT_FILE: MSMg01no055_j09.b1 PHD_FILE: MSMg01no055_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:01 2005CHROMAT_FILE: MSMg01no055_j09.g1 PHD_FILE: MSMg01no055_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCTATCTCCCTGAGATGTAGAATGTTAATTCTGTAGCAATGTTGATG
AGTTCTGATGCTAAAAACACTCATTTTAATGCACCATGAAATACTTAAGT
TCGAGGTTATTTGTAACTATTAGAATATGTTTCAACTCTTAGAATAAATG
CCTTATTAAAATGCACATTTGAACGAGATACAACTCTGAGACCCAGTAGT
TAAAGTTGCTACATCCTCAATAACAGTAATTAAAGCTTACATCTCATCAC
TAATAAAGTGACAAAATGAGTATTATTTATACTTGATTAAAATTCAAATT
TATTTTATTAATAAGATACCAATGCCACTGAACCAAAAGTCAACGTAGTT
TGATAGCTTTCCCAAATCCATTAAATGAAGGTTATGTACAAATTTGGGGT
AAACAGAGGCAGAAAAATGATCAGGATTCGTTTTTTTCCTTGTAGTCAGG
CACATGTAAACTCATTCTCACGGCTAAGCTCTGCAACTTAAAACTGCCTG
TGAATGCATTTTCTTTGCTTCGTATTCTTGTCTACAACATGTGACCATTG
TTCCCTGCATTACTAGGCCTTGTGCTGCTACACCGAGCACAGGCACCTCT
TTGCTCCTTGGCTTCTCCGGACAACCGGGGAATAAATAGACAACCTTTTT
ACAAAATACCTTCG
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTACCTGAGGAATACTGAATGTCTG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAA
ATCCAAACAACCCTGATATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATCCAGGTGACAGGAGATGCTGGCGAGGATGTAGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACTACTCTGGACA
TCATTCTGGAGGTTCCTCAGAAAATTGGACATAGCACTACCGGAGTATCC
CACAATATCTCTCCTGGGCATATATCCAGATGTTCCAACATGGTAAGAAG
GACACATGCACCACTATGTCCATAGCATCCTTATTTACAATATTCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAATATGT
GGTACATTTACACAATGGAGTATTACTCGGCTATTAAAAAAGAATGAATT
TATTGTACTTTTTATTCACCCCATTTTTTACTTTGTTCCCCATTCTTGAG
GTCGCACACATACACTCCTACACATGCTCCTATGATATACTATCATGTTT
ACCTCATCTTTCTTAAACGTCTACCACCGTAAATTCCTCCATCACATTAC
CAGTTCACGCCCATGTTTTTTTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_j09.b1 MSMg01no055_j09.b1 CHROMAT_FILE:
MSMg01no055_j09.b1 PHD_FILE: MSMg01no055_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:01 2005
         (290 letters)



>mm_chr5_49220573_49221262
          Length = 690

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagaatgttaattctgtagcaatgttgatgagttctgatgctaaaaacactcatttta 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 201 tgtagaatgttaattctgtagcaatgttgatgaattctgatgctaaaaatactcatttta 260

                                                                       
Query: 61  atgcaccatgaaatacttaagttcgaggttatttgtaactattagaatatgtttcaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcaccatgaaatacttaagttcgaggttatttgtaactattagaatatgtttcaactc 320

                                                                       
Query: 121 ttagaataaatgccttattaaaatgcacatttgaacgagatacaactctgagacccagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagaataaatgccttattaaaatgcacatttgaacgagatacaactctgagacccagta 380

                                                                       
Query: 181 gttaaagttgctacatcctcaataacagtaattaaagcttacatctcatcactaataaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaaagttgctacatcctcaataacagtaattaaagcttacatctcatcactaataaag 440

                                                            
Query: 241 tgacaaaatgagtattatttatacttgattaaaattcaaatttatttta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacaaaatgagtattatttatacttgattaaaattcaaatttatttta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)