Query= MSMg01no055_p17.b1 MSMg01no055_p17.b1 CHROMAT_FILE:
MSMg01no055_p17.b1 PHD_FILE: MSMg01no055_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:31 2005
(253 letters)
>mm_chr5_14951189_14951840
Length = 652
Score = 377 bits (195), Expect = e-109
Identities = 233/247 (94%), Gaps = 5/247 (2%)
Strand = Plus / Plus
Query: 9 tctagaggtcctttctctagatccagaacaggcacaaatgctgtctatttattagatgct 68
||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 209 tctagaggttctttctctcgattcagaacaggcacaaatgctgtctatttattagatact 268
Query: 69 cttcttgaaactatggataattaaaatatcagttcagttaacttgtggagaaaaataact 128
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 269 cttcttgaaactatggataattaaaatatcagttcagttaa-ttgtggagaaaaataact 327
Query: 129 cagaacttggctatagatgttataacttactttgaatgtatgtgtgcatgtgcattgtgc 188
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cagaacttggctatatatgttataacttactttgaatgtatgtgtgcatgtgcattgtgc 387
Query: 189 ctgagagtatgggtcagtgagtga-g---tgtgtgtttttgtgtgtgtgtgtgtgtgtgt 244
|||||||||||||| |||||||| | ||||||| | |||||||||||||||||||||
Sbjct: 388 ctgagagtatgggtgagtgagtgttgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 447
Query: 245 gtgtgtg 251
|||||||
Sbjct: 448 gtgtgtg 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 652
Length adjustment: 9
Effective length of query: 244
Effective length of database: 643
Effective search space: 156892
Effective search space used: 156892
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no055_p17.g1 MSMg01no055_p17.g1 CHROMAT_FILE:
MSMg01no055_p17.g1 PHD_FILE: MSMg01no055_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:31 2005
(566 letters)
>mm_chr5_15183428_15184393
Length = 966
Score = 948 bits (490), Expect = 0.0
Identities = 520/530 (98%)
Strand = Plus / Minus
Query: 37 agtgaaagaatggataaaacagaatcaaatagtatgaaacagattgatcaccaggtatgg 96
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 957 agtgaaagaatggataaaacagaatcaaatagtatgaaacagattgatcactaggtatgg 898
Query: 97 attcacacctataatctaagcagtcgggaggctgtggtgtgaagattgctgtcagtttga 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 attcacacctataatctaagcagtcgggaggctgtggtgtgaagattgctgtcagtttga 838
Query: 157 ggtcagctttagctgtacaatgagctccagcttaggttatagtgtgagacattgtctcaa 216
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ggtcggctttagctgtacaatgagctccagcttaggttatagtgtgagacattgtctcaa 778
Query: 217 acaaaaccaaaccagcagaacaaaatagaaataatttcaaaattctctttctctgtaagg 276
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 accaaaccaaaccagcagaacaaaatagaaataatttcaaaattctctttctctgtaagg 718
Query: 277 ttgttatcatgatgctatgactaaaactccagtgcattctgacgactaaaggagaggagt 336
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 717 ttgttatcatgatgctatgactaaaactccagcacattctgacgactaaaggagaggagt 658
Query: 337 aagaaagctttattcaaggcagcttaactgggaagagcagatgctgaggcttagtgacct 396
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 657 aagaaagttttattcaaggcagcttatctgggaagagcagatgctgaggcttagtgacct 598
Query: 397 taggtgtgttttcatggagctgagatttcttagtgatgccctctgtctctcttgttctgc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 taggtgtgttttcatggagctgagatttcttagtgatgccctctgtctctcttgttctgc 538
Query: 457 taagacactgacccaaagcatattggcacaggaaagaatttatgtggcaggaactgaaaa 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 taagacactgacccaaagcatattggcacaggaaagaatttatgtggcaggaactgaaaa 478
Query: 517 agagacccgcgagaggttccttttcgttggatagttctcagataattttt 566
|||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct: 477 agagacccgccagaggttcctcttagttggatagttctcagataattttt 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
