BAC Information

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BAC

Clone NameMSMg01-056E05
Chromosome5 (Build37)
Map Location 16,359,857 - 16,360,335
singlet/doubletsinglet
Overlap genenone
Upstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056E05.T7 (MSMg01no056_e05.b1)MSMg01-056E05.TJ (MSMg01no056_e05.g1)
ACCAG283714AG283715
length698749
length of high quality
(start - end)
484 (47 - 530)73 (68 - 140)
definitionCHROMAT_FILE: MSMg01no056_e05.b1 PHD_FILE: MSMg01no056_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:53 2005CHROMAT_FILE: MSMg01no056_e05.g1 PHD_FILE: MSMg01no056_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCATTTTTTCGCTCGAAATAATCCTGGGCTGGACTCTGTCTTGGCG
TGTGCTGATATACCCAACTTCCTCTACTGGAGAAAACTGGTTTTCTTTTT
CCTAGCAGTTATCAGTTGCAAATAGATTCTTGGATAGAGATGAGACCCTG
TGTCCAATCCCCCGTTCAGTGCTAGGCTGACAAAATAACCAACCAACACT
AATCAGAAGAGGTAGGGAAGACTATTGCACTATCATTCAGAAGAAAAAAA
TCCACAAGGAGGAAATTACAATTCTAAACATCTATGCACCAAGCACAAAG
ACACCCGACTTTATAAATGTGATTTTTGCTTACTCTAAAGTTTAGAGTCT
AAATCATATTAAGCAAATTATCCACAGCTTCCCAATTTGTCAAACTTTAC
CTTATTTATGTTTAAAAACATATAAAGTTTATTTATTTATGTGTTCTAGT
TTATCTTTATCCATTTTGCCTGTATTTACTCTCAGTATGTACATGCCTGA
TGTTCCAGAATGTCTTACTAACACGTTTGATTTCCTGAAACTTAACCAAT
GAATGGTTCTAATTTGCCATATAGGTGCTGTGAAACTGAATCTGGGTCCC
TTCCTTTAAAAATAATGATTGTTTTTAACTGGCTGAAACATGACCCCC
CGATGCAGTGGGAGGCCTGGCGGCCGCCTGTTTCAAAAAATTAGGTGAAC
TATAGATTTCCCGCGCAATTCCTTTCATTGTATGTTCTGTATTGTGTGCT
TTGGTTTAAGAGAGACCCTGCAGTCATTTTTTTTTTCAAATATAACGCTC
CACTTAATTGTGGTTTAAATTGTTACCTTTGGTAAATGCTAACCCCTTCA
TGTCTGATTGCACCATCTATAATGAGTTTGAAGAAATAAACATTATCATG
AATAGTGCATTCGTACAGACTACCTCCCAATATAGATACTTACAATGTGT
TAAAACTACGTGCTTTTTTCGCTATTAGTGCAATTATTTAACTTTTAAAC
TTGATTCTCAAATGCAATTTGCGAATTTTCTATATGACTCACATAGCGTA
AAATCTTAGTCAAATCCATAAACAATGGTTTTAATGTAGTTGCCAAGAGT
TATTGGTTTCCGGAAATTTTCCTGCAATGTTGTTTCCATTAGCTAGCCTT
ATCAAACTCTTTCCACATACTTTGTCTTTAATTACTCTTACTATGTAACT
TAGCAAGAGCTTCACAATTTGACTATTTTGGTACCATGCATTAAGCCTGA
ATTTCTGAAACCTGTGTTCTTTTTAAGTAACCCCCAATCCTTTATAGTAT
CTTGATGCCTTGGGGAATAGACTATTTCCCCAATCCTTTAAACCTCATCT
CCACTTTCCCCTTGTAATTGCAGCCCACACCTACTATATTTCATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_e05.b1 MSMg01no056_e05.b1 CHROMAT_FILE:
MSMg01no056_e05.b1 PHD_FILE: MSMg01no056_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:53 2005
         (484 letters)



>mm_chr5_16359653_16360536
          Length = 884

 Score =  884 bits (457), Expect = 0.0
 Identities = 475/481 (98%), Gaps = 3/481 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattttttcgctcga-aataatcctgggctggactctgtcttggcgtgtgctga 62
           |||||||||||| | | | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcattttgt-gtt-gacaataatcctgggctggactctgtcttggcgtgtgctga 262

                                                                       
Query: 63  tatacccaacttcctctactggagaaaactggttttctttttcctagcagttatcagttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tatacccaacttcctctactggagaaaactggttttctttttcctagcagttatcagttg 322

                                                                       
Query: 123 caaatagattcttggatagagatgagaccctgtgtccaatcccccgttcagtgctaggct 182
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 323 caaatagattcttggatagagatgagaccctgtgtccaatccccctttcagtgctaggct 382

                                                                       
Query: 183 gacaaaataaccaaccaacactaatcagaagaggtagggaagactattgcactatcattc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gacaaaataaccaaccaacactaatcagaagaggtagggaagactattgcactatcattc 442

                                                                       
Query: 243 agaagaaaaaaatccacaaggaggaaattacaattctaaacatctatgcaccaagcacaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agaagaaaaaaatccacaaggaggaaattacaattctaaacatctatgcaccaagcacaa 502

                                                                       
Query: 303 agacacccgactttataaatgtgatttttgcttactctaaagtttagagtctaaatcata 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agacacccgactttataaatgtgatttttgcttactctaaagtttagagtctaaatcata 562

                                                                       
Query: 363 ttaagcaaattatccacagcttcccaatttgtcaaactttaccttatttatgtttaaaaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttaagcaaattatccacagcttcccaatttgtcaaactttaccttatttatgtttaaaaa 622

                                                                       
Query: 423 catataaagtttatttatttatgtgttctagtttatctttatccattttgcctgtattta 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 catataaagtttatttatttatgtgttctagtttatctttatccattttgcctgtattta 682

            
Query: 483 c 483
           |
Sbjct: 683 c 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)