BAC Information

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BAC

Clone NameMSMg01-056F16
Chromosome5 (Build37)
Map Location 133,763,303 - 133,763,494
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056F16.T7 (MSMg01no056_f16.b1)MSMg01-056F16.TJ (MSMg01no056_f16.g1)
ACCAG283784AG283785
length719723
length of high quality
(start - end)
238 (78 - 315)193 (69 - 261)
definitionCHROMAT_FILE: MSMg01no056_f16.b1 PHD_FILE: MSMg01no056_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:59 2005CHROMAT_FILE: MSMg01no056_f16.g1 PHD_FILE: MSMg01no056_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATCAXXXXXXXXXXXXXXXXXXXXXXXACTACATCGTGAGGTGGCGCG
GAATTCAGTTTCTTCCCTAAAGAATTACAGAAATGCTGAGTAATACACCA
ATATTCTTTGAGCAATAGTTCTCTACCTTCCTAATTGATGTGACCCTTTA
ATGCAGTTTCTCATGCTGTGGTTACCCCAATCACAAAATTATTTTCATTG
CTACATCATAATTGTAATTTTGCTATTGTTATGAATCATAATGTAAATAT
CTGTGTTTTCTGATGTGATGCTTACAAAAGGATCATTCAACCCTCAAAGA
AGTTGTGATCTACAGATTTTTTTTTTCTAATCTAGAAGCTTAACGATATT
GAACCATGTGTTTTTAATGCCCCAACACCCACATTAACTCAGGCTGTCAC
TGCCTCATTCCCAATTCCATGGAAAATGCAAATAGAAGATTTTCCTGCTT
TCTGCATATATGTAAATATACCTCTATCTATTCTTATATCTGATGATATT
TGAATTTCTTACAAAACTGTATAAATATCACTTTTGAAAGTTAATGAATA
AACTTTTAGTATTTTGATTTTTTCTCCTAAATGATTTACTATATGTATTA
ATACTCTACTCATATACTCATTAACTAAGCATTAAAACCTATTATTTATG
TATCTAATTGTTTTTTTTTAAACAATTATTGTATACTCATATTCACATTA
CCTGTTCTTTATATTAATA
TTTTCATGAAGTGGTAGGCTGGCGCCGCCTGTTTCAAACATTAGGTGACA
CTATAGAATTTCCCCGAAATCTCTGGGGGAGATAATTCATCTTATTTGTC
TAATAGAGTGATGATTTTTGCTTAACCCGGCAGTCACCCCCTCTTCCAAC
TCAGTGCTTGGAAAATAATAATTGCTGACTTTTTAATTGTTTGGGCTGAT
AAAACTGTCAAGCGAGCACGAGCTATATCAAAACCAGCTGCATGCCATTT
TCTTTTGTGTGTATATATGTCAAAATCTGTTTTTCTACATTTAAACTTTC
TGACTTCTCTTTACTTATAAAACATAACCAGCCCCTTTTCAAGGATAATT
TCATATTTTCCTGAACTCACCTGCCTTCTGTTTTTGTTGTCTCCTTTCTT
TGCTCTTGTTCTGATTTCCTCCTTTGTTGTTAAAATGGTCAAATTATTTT
TACTGTACCCACATGTTCAAATGTTATGCTCATATAACGGTACAAATACA
GCTGTCTCTCTTTTGCACGTACAAAAGTGCATATAATCAAAAATATCAGT
AATTTTCACAGAAAGAAATGATTATGAGCGATATCTAATCTATACTATCT
TCTTCAAATACACTCATCTTCTCTCAAAAACACTTACCATACAAACCCTG
ACAACAACCACAACCTCCCCACCTTCCTTTCTATCTCACACTCACACCCC
ACCCTCTAGTCCCTAACCATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_f16.g1 MSMg01no056_f16.g1 CHROMAT_FILE:
MSMg01no056_f16.g1 PHD_FILE: MSMg01no056_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:59 2005
         (193 letters)



>mm_chr5_133763102_133763694
          Length = 593

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   tctctgggggagataattcatcttatttgtctaatagagtgatgatttttgcttaacccg 61
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 393 tctctgggggagataattcatcttatttgtctaaaagagtgatgatttttgcttaacccg 334

                                                                       
Query: 62  gcagtcaccccctcttccaactcagtgcttggaaaataataattgctgactttttaattg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gcagtcaccccctcttccaactcagtgcttggaaaataataattgctgactttttaattg 274

                                                                       
Query: 122 tttgggctgataaaactgtcaagcgagcacgagctatatcaaaaccagctgcatgccatt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 273 tttgggctgataaaactgtcaagcgagcacgagctatatcaaaaccagctgcatgtcatt 214

                       
Query: 182 ttcttttgtgtg 193
           ||||||||||||
Sbjct: 213 ttcttttgtgtg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)