BAC Information

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BAC

Clone NameMSMg01-056K09
Chromosome5 (Build37)
Map Location 71,186,116 - 71,186,489
singlet/doubletsinglet
Overlap geneGabrg1
Upstream genenone
Downstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4, Gabrb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056K09.T7 (MSMg01no056_k09.b1)MSMg01-056K09.TJ (MSMg01no056_k09.g1)
ACCAG284007AG284008
length734713
length of high quality
(start - end)
383 (45 - 427)238 (71 - 308)
definitionCHROMAT_FILE: MSMg01no056_k09.b1 PHD_FILE: MSMg01no056_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:22 2005CHROMAT_FILE: MSMg01no056_k09.g1 PHD_FILE: MSMg01no056_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATTGTCCCTTTAAATTAGCCATCCTAGATTAAATAATCACTTTG
AAAACAGCAAAAGTTAGAACCCCAGGCCTTTCCATTACTCTATGAGAGCA
AGATTGCTATATACTCACTAACAAAATATTCATCAAATTTAAATATATAC
ATATATTATTTATGTAAAAATAGAAATATATGTTATTTATATATAAAAAT
ATAGTCTAACCCTAAAGGCCTAGATCTAACCCAGAAAAAAAAATCTGTTA
AACATTTTATTGAATATAAAGTTGTAATTTTGGTGAACAAAATTTTAGTG
AACAATTTTTAGATATCTGTAATATTTTAGATTTTACACATGAAATATTA
ATTCTGATTTATATTCATATAACTGATTTCAAATTAAAATTATTTTCAGA
CTTTGTAACAGGTTTTTGTTGCTACCTTTCATAACGAGTATATTACCTAT
TGAAATAAATAAATAAAATTGATGGCAAACCTAAGTTTAAAGGGTTTCTT
TTCAATCCTTTGAAATTCTTAAACCCCTTCCATTCTTGTTGCCGGCTTTG
CCAGGGGAAACCCCCCAAGGGAATGGGAAACACAAGGGTTTATTGTAAAA
ACCAGCATTTGGGACCCTGGGGGAATCCCCCAATAAAACCTGGGGTAAAA
AAAAGCTGTGGGGAAATTATAAAACAGGGGTTTN
ATTGAAGTGGGAGGCCTGGNGGCCGCCTTTTCCCACCGGGAGGNGAACNA
NAGAATGACTNGAGGGATCAACCCAGACCNANCACTGGAAGCCTCGCCTG
GCCAGCTGAGAACCCATATTCCCCAATACTAAGTGCCCTCATTAGTATCA
CTATCAAAGGATCCAGGAAGTTCCCACTGCACTTGGACTTCATACTCCTC
CCCATGTCCCCACAATTCCAGCTTTCTCTTCATGCATTACTTCCCTCTAT
CTCACCCCCTAATGTGATCCATCTCTTTCCAATCCCCAGCTGCTCCTCAA
CACCTGTTTATATTATTCAACTACCACTTTCCAGGGAGATACATGTGTCC
TTTCTAGACCCCTCCTCTTTACCTGACCTCTCTGGGTCTACAGTTGTACA
TTGGTGTCAAAGTTTGAATATATATGGCCCATAGGGAGTGGTACTGTTAG
GGAGAGTGGCCTTTTGATGAAATGGGTCACTATGGGGACAGACTTTGCAA
GTCTCCTTTCAAGCTCAAAATCCACCTATGAAAAAACCTCCCACTGGCTC
CCCTGGTGAAAAAAAAAGTTTCGGGCCTTTTGGGATTCGGATAGAAAAAA
AAAAAAACTTTTCAATCCTCCTTTCAAAAAGAAACACAAACCGGGTCTTT
TTTTTTTTTTCTCAGGGGCTCCCCGGGCCTCCCAATGGGAAAACAGGGCC
TTCGAGAAACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_k09.b1 MSMg01no056_k09.b1 CHROMAT_FILE:
MSMg01no056_k09.b1 PHD_FILE: MSMg01no056_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:22 2005
         (383 letters)



>mm_chr5_71185707_71186489
          Length = 783

 Score =  692 bits (358), Expect = 0.0
 Identities = 370/374 (98%)
 Strand = Plus / Minus

                                                                       
Query: 10  cacattgtccctttaaattagccatcctagattaaataatcactttgaaaacagcaaaag 69
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 cacattgtctctttaaattagccatcctagattaaataatcactttgaaaacagcaaaag 724

                                                                       
Query: 70  ttagaaccccaggcctttccattactctatgagagcaagattgctatatactcactaaca 129
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttagaagtccaggcctttccattactctatgagagcaagattgctatatactcactaaca 664

                                                                       
Query: 130 aaatattcatcaaatttaaatatatacatatattatttatgtaaaaatagaaatatatgt 189
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aaatattcattaaatttaaatatatacatatattatttatgtaaaaatagaaatatatgt 604

                                                                       
Query: 190 tatttatatataaaaatatagtctaaccctaaaggcctagatctaacccagaaaaaaaaa 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tatttatatataaaaatatagtctaaccctaaaggcctagatctaacccagaaaaaaaaa 544

                                                                       
Query: 250 tctgttaaacattttattgaatataaagttgtaattttggtgaacaaaattttagtgaac 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tctgttaaacattttattgaatataaagttgtaattttggtgaacaaaattttagtgaac 484

                                                                       
Query: 310 aatttttagatatctgtaatattttagattttacacatgaaatattaattctgatttata 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aatttttagatatctgtaatattttagattttacacatgaaatattaattctgatttata 424

                         
Query: 370 ttcatataactgat 383
           ||||||||||||||
Sbjct: 423 ttcatataactgat 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)