BAC Information

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BAC

Clone NameMSMg01-056K14
Chromosome5 (Build37)
Map Location 43,577,962 - 43,578,202
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636612, LOC433883, EG665934
Downstream geneCpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056K14.T7 (MSMg01no056_k14.b1)MSMg01-056K14.TJ (MSMg01no056_k14.g1)
ACCAG284017AG284018
length695717
length of high quality
(start - end)
241 (63 - 303)246 (73 - 318)
definitionCHROMAT_FILE: MSMg01no056_k14.b1 PHD_FILE: MSMg01no056_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:23 2005CHROMAT_FILE: MSMg01no056_k14.g1 PHD_FILE: MSMg01no056_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTAAACGACTCATTTTCGCACGAGGATCCGCGGAATTCCTATTG
CTGAAACACCTGTGTTCATTGGGACTTTTAACTTGTATACCATGCTGGGC
CCTGTTTACTAGTTGAAATGGAGTCATTCTATGTAACATGGTGTTGACCT
AAGTCTGAATTTTCTTGCAAAAGTATTGAGGGCTTTGAGGAAACAAAAGT
GCTGATTTCCCCCAATCTAGTCATCAGAAATGGACTTGTGCCAACACAAT
CTCTCTCTAGCTAGTCCTGGCTCAAGTGGTAGCTTTACTCTTTAGAAAGC
AATTTCTGTTTTCTAACAGCTTCACATTTATCATTGAGACACTTTCTCCT
CTCTTCTCCCCGGCTTCTGTTTGGTTTTCCCTCCTTGGCTTGGTAAAGAA
CACATAGTTACTGAAAAGCGATGCTGAAAAAAAATTAAACAATGAAAATT
ATAACAAAGGAGCATGGAAAAACACATTTGTAAGATATGGAGTTTGAGTT
TACACGTATACTAATTTGGTGGTGTGCAATGTAATTAAACACATTTGTTT
AAGTGTAAACCTTAGCCAGAGCTTATAATTAAACTCATTGAACCAGAATT
GTTTTTTAATGACAAATTTAAATGTCAGTTTGGATGTGTGTTTTATGTGT
ATACACACTCTCTCACACCCCCCGCTCACGCACACACATTACACT
TCGATTGATGTGGGTAGGACTGGAGGACGCCATTTCGTACCGAGGTAGGN
GACACTATAGATTGCAACAAAAAATTCATTGAGATTAATAAAAGGAACAA
TAGCACAGGTTGTGTATATAATTGCCCAAAAATATTTATTGTGTACCTAT
TAAGTATTTGTTCAGAAAAAGAAAAATGATATAACTTGCAAAGGACTACA
TAGAAAGATGTCTAACTTTGGTTATTGCTTTAATAAGTGCAAATTAAAAC
AGCAGGATATTTTTATTTTGCCTATCAGATTGGCAATGATTAAAAGGAAT
TACAAAATATGGCTTTGGCTTTATTTTTGGGAAACAGATATTCACACACT
AGTGATTGGGCTATATATTGCCCCAACTTCTTTGAAGGTCAATTTGGCAA
AAGGTCAATATCCATGAAAATACTTTTAACTCAGAATTTCCACTCCAGAG
ATTGTTCTCCAGTTGATTTACCCACACATGCATTCAACAATGCAAAGTCG
AGGGTACTAATTGTGGATTGGGGAAGGAAAAATAAAATGTTGCAAATAAT
ATGGCCTGAGAGATGGCTTATCATTTAAGAGGGCATTCTGCTCTTGTACA
CAGCATGTTTGACACCCAATACATGCATGTTGCCTCACAACCATCTATAA
CTTCTGTTCCTTGTTTATCTGCAACCTTCCTTCTGGCCTCCTATGGCTCC
TATAAAGCTTATTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_k14.b1 MSMg01no056_k14.b1 CHROMAT_FILE:
MSMg01no056_k14.b1 PHD_FILE: MSMg01no056_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:23 2005
         (241 letters)



>mm_chr5_43577762_43578402
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttcattgggacttttaacttgtataccatgctgggccctgtttactagttgaaatgga 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tgttcattgggacttttaacttgtataccatgctgggccctgtttagtagttgaaatgga 382

                                                                       
Query: 61  gtcattctatgtaacatggtgttgacctaagtctgaattttcttgcaaaagtattgaggg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcattctatgtaatatggtgttgacctaagtctgaattttcttgcaaaagtattgaggg 322

                                                                       
Query: 121 ctttgaggaaacaaaagtgctgatttcccccaatctagtcatcagaaatggacttgtgcc 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ctttgaggaaacaaaagtgctgatttcccccaatccagtcatcagaaatggacttgtgcc 262

                                                                       
Query: 181 aacacaatctctctctagctagtcctggctcaagtggtagctttactctttagaaagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacaatctctctctagctagtcctggctcaagtggtagctttactctttagaaagcaa 202

            
Query: 241 t 241
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)