Query= MSMg01no057_c05.b1 MSMg01no057_c05.b1 CHROMAT_FILE:
MSMg01no057_c05.b1 PHD_FILE: MSMg01no057_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:59 2005
(596 letters)
>mm_chr5_102690823_102691823
Length = 1001
Score = 1042 bits (539), Expect = 0.0
Identities = 584/601 (97%), Gaps = 5/601 (0%)
Strand = Plus / Plus
Query: 1 ctgcaagaccctccatgaacaccatcagcccctgaacacggcggccgcttcagatttcat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ctgcaagaccctccatgaacaccatcagcccctgaacacggcgaccgcttcagatttcat 260
Query: 61 gatgcccagcttcctcctccaatctcatcttcgcataaacaaaggattcagaaagcagcc 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatccccagcttcctcctccaatctcatcttcgcataaacaaaggattcagaaagcagcc 320
Query: 121 cgcattccagaatgcacgtggttttgtaacggcaccgtggtttcacatctcaagagggtt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcattccagaatgcacgtggttttgtaacggcaccgtggtttcacatctcaagagggtt 380
Query: 181 cctgttttatttgtttgtctgtttttt-aaaaacatttttaaagtaaaattttttgtcta 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cctgttttatttgtttgtctgtttttttaaaaacatttttaaagtaaaattttttgtcta 440
Query: 240 atggttgttcacagttaatgagaaaacgaagcacaggtgtgaggcttttg----cagaga 295
|| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 atagttgttgacagttaatgagaaaacgaagcacaggtgtgaggcttttggaggcagaga 500
Query: 296 ggcgtgaaagtttgggtgctaggatgaagatacccgatgaagttcctacaggatttggaa 355
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ggcgtgaaagtttgggtgctaggatgaagatacccgatgaagtacctacaggatttggaa 560
Query: 356 actcaaatgatcttctgagagttcaactagtaaaatccaaagatgtgcaatcatctctaa 415
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 actcaaatgatcttctgagagttcaactagtaaaatccaaagaagtgcaatcatctctaa 620
Query: 416 gagcctaagagtaggtggacaggtaaaacctcagagaggcggactacacggaagcgttta 475
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcgcctaagagtaggtggacaggtaaaacctcagagaggcggactacacggaagcgttta 680
Query: 476 caggcaaggagtggatgtgcactgggagggagctcaggataccttcctcagcggaggaca 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 caggcaaggagtggatgtgcactgggagggagctcaggataccttcctcagcggaggtca 740
Query: 536 tcagataccgatggacagatgtgagctgctgttgtcctcaagtctcaaggctcccaagct 595
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 741 tcagataccgatggacagatgtgagccactgttgtcctcaagtctcaacgctcccaagct 800
Query: 596 g 596
|
Sbjct: 801 g 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1001
Length adjustment: 10
Effective length of query: 586
Effective length of database: 991
Effective search space: 580726
Effective search space used: 580726
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_c05.g1 MSMg01no057_c05.g1 CHROMAT_FILE:
MSMg01no057_c05.g1 PHD_FILE: MSMg01no057_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:59 2005
(512 letters)
>mm_chr5_102798192_102799101
Length = 910
Score = 932 bits (482), Expect = 0.0
Identities = 504/512 (98%), Gaps = 2/512 (0%)
Strand = Plus / Minus
Query: 1 cttagccttctcttactttgtgagagaagtgatgttttttggtttaaaacagttgctgat 60
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 710 cttagccttctcttattttgtgagtgaagtgatgttttttggtttaaaacagttgctgat 651
Query: 61 ctgtgtgaataaaagtaacactttagagtcattacattactaagctgctgaaagtggttg 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 650 ctgtgtgaataaaagtaacactttggagtcattacattactaagctgctgaaagtggttg 591
Query: 121 tttgttatgctaattgggcatgaatgtttatcatgggatgagaggtcattatcagcctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tttgttatgctaattgggcatgaatgtttatcatgggatgagaggtcattatcagcctgt 531
Query: 181 aattaaaacattttggtattcaggtggaaacttccagagacagagccctgaagtagaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aattaaaacattttggtattcaggtggaaacttccagagacagagccctgaagtagaaag 471
Query: 241 atcagtgactacttaaattctcccaatagaaaagcatggcttgctcagggaaagggaata 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 470 atcagtgactacttaaattctcccaatagaaaagcatggcttgctcagtgaaagggaata 411
Query: 301 tgaaataaaactttgcttgaccttctaagttcagctatggcacttaaccaaggtcagtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgaaataaaactttgcttgaccttctaagttcagctatggcacttaaccaaggtcagtca 351
Query: 361 attgactgctcagtcaattaaagacaaagcccaacgtttatgtattagcagaccactatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 attgactgctcagtcaattaaagacaaagcccaacgtttatgtattagcagaccactatt 291
Query: 421 ccaaactcaaggggtgggagaatccctacgcatcgtgttcttagagccaatgaaatcaca 480
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 290 ccaaactcaaggggtgggagaatccctatgcatcgtgttcttggagccaatgaaatcaca 231
Query: 481 gagagagagatgttttcaggtaaaacgagaag 512
|||||||| ||||||||||||||||||||||
Sbjct: 230 gagagaga--tgttttcaggtaaaacgagaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 910
Length adjustment: 10
Effective length of query: 502
Effective length of database: 900
Effective search space: 451800
Effective search space used: 451800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
