Query= MSMg01no057_h21.b1 MSMg01no057_h21.b1 CHROMAT_FILE:
MSMg01no057_h21.b1 PHD_FILE: MSMg01no057_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:27 2005
(191 letters)
>mm_chr5_56935795_56936385
Length = 591
Score = 346 bits (179), Expect = e-100
Identities = 188/191 (98%)
Strand = Plus / Minus
Query: 1 tcattaattttcatggtaataatactttcaaaatttattgaaagttatgtagtggttaaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcattaattttcatggtaatagtactttcaaaatttattgaaagttatgtagtggttaaa 332
Query: 61 gatacttttgagacaagaaaatcacacctgccatgttttcttgtcttcttatcagttctt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 331 gatacttttgagacaagaaaatcacacctgccatgttttctggtcttcttatcagttctt 272
Query: 121 tttaatattttaggaaatcctattggtgttacattataaattaaattaatgtagtctata 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tttaatatcttaggaaatcctattggtgttacattataaattaaattaatgtagtctata 212
Query: 181 ttggcttatgg 191
|||||||||||
Sbjct: 211 ttggcttatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space: 106689
Effective search space used: 106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no057_h21.g1 MSMg01no057_h21.g1 CHROMAT_FILE:
MSMg01no057_h21.g1 PHD_FILE: MSMg01no057_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:27 2005
(621 letters)
>mm_chr5_56764574_56765592
Length = 1019
Score = 1120 bits (579), Expect = 0.0
Identities = 611/623 (98%), Gaps = 4/623 (0%)
Strand = Plus / Plus
Query: 1 ttcatttaaagatgaagatgtagcttataatctcaacactcagggagctgatgtagaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttcatttaaagatgaagatgtagcttataatctcaacactcagggagctgatgtagaaag 258
Query: 61 atgatgagctgaggccagccttgtagagcatgtattgaaagaacttgtgtcataaacacc 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 259 atgatgagctgaggccagccttgtagaccatgtattgaaagaacttgtgtcatcaacacc 318
Query: 121 attagaaaaaaaaa--tgtttggtccatttgtgacatcacacacccttaatgccagcagt 178
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 attagaaaaaaaaaaatgtttggtccatttgtgacatcacacacccttaatgccagcagt 378
Query: 179 agagtagcagaggctgactgatatttgtgagttcctagccagctagaggtgtattttgag 238
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 379 agagtagcagaggctgactgatatctgtgagttcctagccagctagaggtgtattttgag 438
Query: 239 aacctacctttaatttaaaaagttagcagtgtctttcagaaaatgttagggtctaatggc 298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 439 aacctacctttaatttaaaaagttagaagtgtctttcagaaaatgttagggtctaatggc 498
Query: 299 accattgaaacttttaaatcacattcaattattcattatattcatatacaactaaaacca 358
| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 499 atcattgaaacttttaaatcacattcaattattcattatattcatatataaataaaacca 558
Query: 359 ttaactactgtcaatttcaaatatttgcctgtgaagattgaacgaacctgtggagacact 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttaactattgtcaatttcaaatatttgcctgtgaagattgaacgaacctgtggagacact 618
Query: 419 gcaaaatatcttccaaagataaacatagaatatgtttcaaaatctcctctctctgtctgt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gcaaaatatcttccaaagataaacatagaatatgtttcaaaatctcctctctctgtctgt 678
Query: 479 ttataacttcaagtcttttcattcctttaaaagaaggctagtattgatcacctttgtctc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttataacttcaagtcttttcattcctttaaaagaaggctagtattgatcacctttgtctc 738
Query: 539 caaaggccatctgacaaataggaagaaatttatgtctaagctgcttattgaacaaagaca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 caaaggccatctgacaaataggaagaaatttatgtctaagctgcttattgaacaaagaca 798
Query: 599 caaattaatgactataatatctt 621
|||| |||||||||||||||||
Sbjct: 799 caaa--aatgactataatatctt 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1019
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1009
Effective search space: 616499
Effective search space used: 616499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
