BAC Information

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BAC

Clone NameMSMg01-057H23
Chromosome5 (Build37)
Map Location 40,074,580 - 40,074,920
singlet/doubletsinglet
Overlap geneHs3st1
Upstream gene6820424L24Rik, Clnk, LOC384174
Downstream geneEG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057H23.T7 (MSMg01no057_h23.b1)MSMg01-057H23.TJ (MSMg01no057_h23.g1)
ACCAG284639AG284640
length721723
length of high quality
(start - end)
131 (113 - 243)341 (67 - 407)
definitionCHROMAT_FILE: MSMg01no057_h23.b1 PHD_FILE: MSMg01no057_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:28 2005CHROMAT_FILE: MSMg01no057_h23.g1 PHD_FILE: MSMg01no057_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCAAACGACTCACAATTTCCTACCGGCGCGGAANCACNCCTAT
TACACCATCCGCGGGGNGAANAGNGGGGGGANGGGCAAGCAACAAANCGG
GAGTTGCCCCCCCATATCAGGCGCTGAAACGACACGCTGCGGGCTATAAA
AGCAGCGCCATTTTCCCGGTTTGGGATCTTCCTGAGAAACAAGCAATAAA
GCTCTTGCCGCGGAAGATTCTGGTTTGTTGCATCTTTCTTGTTTTTCGAG
CGGGACGCAATACTCTCTCTCGCTCTTTCTCCAAATGAGAGTCTGATAAA
CAGTTTTTCCTATCATGGAAAACGATTCTGAACTTTTAAAAACAAGGAAG
GACCACCCCCGTTATAGGATTTTACTGGGTACATAATGGGCCATCTTCAA
GCGCCTATAATATTTGCAGATTTAACAACAGAAGAAAAACTATAAAGGGA
GAGGAACACTTAAGACCAGTACAATATTGGCTGAAAGCAAACAGGACAAA
ACAAAGCTTTTTTTTTTCCTATTTTTTTTAACTAGGTATTTTCTTCATTC
ATATTTCCAATGCTATCTCAGAAGTCCCCTTCGCCGCCTCACCCACTCGC
GCTACTTCTATCCGTTCTTACACTACTTTACATCGGCGACTGACAACATA
TTTTTTTTTTTCTTTTTCGACCACCCACGCGGGGCATCTCTCCATATGCC
CTCCCCCCTTTTTCTCCCTCT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATTAGTGCCAACCACATAGATTTCATCTATCCC
AGGCTGGCTTCAAAGTAGCTGAGACTGATTTTGGATTTCTGATCCTCCTG
CATCTATACACTGAGTGCTGGGAATGAGGACATGCACTGCCACATCCAGA
TTACATATGGTGCCCTGGCTCACATCTAGCATTCGTGGATGCTAGGCAAC
TGATCTATTAACTGAGTTACATCTTTTTAAAGGGGAAGAAAGGCAAAAGT
AAAAATAATACAGGACATTATGACTCCTTTTCTTTACTAAGATTTAGCTA
CCCTGAGCAAATCCTCTGCTCCAATAGAAGATGAATAGCTTATAATATGT
GGTAGGTACCCCCACAAGGACATGTTTTAAATAATAGCCCACATAACAGC
ATCTGCACACATCAAAATCTTCACAAAAAGAATCACACATAATGAGATAT
GGACTGATTACAGGAAATCATGTTTGATACACTGCGGGTTTTCCACTTTT
GTCCCATACTGCTTATTTTTGTCTGATTTTCATTATTAACCCCACCCTGT
TCACATATTTTCTTCTGATAGCCTTACTCCCCCCCACTCTGTCTCTTTGT
CACACTTCCTCCTTTTTTCTGTTTCACTTCTACAACCCCTCTTTCCCATC
TCGTGCAATCCTTCTCAATCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_h23.g1 MSMg01no057_h23.g1 CHROMAT_FILE:
MSMg01no057_h23.g1 PHD_FILE: MSMg01no057_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:28 2005
         (341 letters)



>mm_chr5_40074380_40075120
          Length = 741

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattagtgccaaccacatagatttcatctatcccaggctggcttcaaagtagctgagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattagtgccaaccacatagatttcatctatcccaggctggcttcaaagtagctgagact 260

                                                                       
Query: 61  gattttggatttctgatcctcctgcatctatacactgagtgctgggaatgaggacatgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattttggatttctgatcctcctgcatctatacactgagtgctgggaatgaggacatgca 320

                                                                       
Query: 121 ctgccacatccagattacatatggtgccctggctcacatctagcattcgtggatgctagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgccacatccagattacatatggtgccctggctcacatctagcattcgtggatgctagg 380

                                                                       
Query: 181 caactgatctattaactgagttacatctttttaaaggggaagaaaggcaaaagtaaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactgatctattaactgagttacatctttttaaaggggaagaaaggcaaaagtaaaaat 440

                                                                       
Query: 241 aatacaggacattatgactccttttctttactaagatttagctaccctgagcaaatcctc 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatacaggacattaagactccttttctttactaagatttagctaccctgagcaaatcctc 500

                                                    
Query: 301 tgctccaatagaagatgaatagcttataatatgtggtaggt 341
           |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tgctccaatagaagatgaatagtttataatatgtggtaggt 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)