BAC Information

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BAC

Clone NameMSMg01-057I21
Chromosome5 (Build37)
Map Location 99,048,597 - 99,048,788
singlet/doubletsinglet
Overlap gene1700007G11Rik
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5
Downstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057I21.T7 (MSMg01no057_i21.b1)MSMg01-057I21.TJ (MSMg01no057_i21.g1)
ACCAG284682AG284683
length710701
length of high quality
(start - end)
509 (69 - 577)191 (120 - 310)
definitionCHROMAT_FILE: MSMg01no057_i21.b1 PHD_FILE: MSMg01no057_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:32 2005CHROMAT_FILE: MSMg01no057_i21.g1 PHD_FILE: MSMg01no057_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAATT
CTTTGTTCTTTTCTGAACCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTT
CAGGAATCTTTCCCCTGTACCCTTATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTGAAGAAAT
CCAAAACACCATCACACCCTTCTACAAAAGCTTATACTCAACAAAACTGG
AAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAG
TTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGA
AATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAG
ATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCA
GTTCTGCACAAACTATTTCACAAGATAGAAGTAGTAGGTACTCTACCCAA
CTCTTTTTAT
TGCTGTGGGAGGCCTGGCGGCGCCTGGCTTCCCCACCGCGNGAACNANAG
AAGGATTGCGGCATCGGCGCCCNNAAAAGAAACCAACCAAAAGAGGNCNC
ATNAGGGAAATTCCCCCAAAAAACACATTAAAAAGGACATATNAGNTTTT
GAAGTCACAAGTCTAGAGAGACAATAGGATTTTCATTTGCTGTTTATAAG
GGAAGTCTTAATTGTGATAGTTGCTCTTGATTGGATTGAGACATCTTTTT
TATGAAGAAAGCATGCTTTGTCTGTCTCCGAGGGTGCTCTCAAAGGTGAT
TGGACCATGATGTTTTCGTTTTAACGGANAACCCAANCCCCCTANNAGGA
TATAAGTTTCCCCCCTCACAAGGTGATTAAACGGTAGAAGGTGGAGCTGA
TGAGAAACCGACCTACTGTGACCAAGTGTTTGAAGATTTTGTCTTAGTTG
TTTCCTTCTGTTTCCTGGATGCCCTGAGGTAAACATCTTTCCTCAGCCAC
ATCCTTCCTCCCTGGCATCTCTGCCTTGCCCAAGGTCTGAAAGCCGTGGA
TTCAGTTGACTGTTGACGACTTCTGATTCCCCCACATGTAAATAAGCCAC
CTCCCCGTGTACTTTCCCCAGATATCTTGCTACCTATGACCCAAAGCCTT
TCTTTTTTTTTTTTTTGCCCGAAGGTCTCATTTCTTATTTAAAATTCCCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_i21.g1 MSMg01no057_i21.g1 CHROMAT_FILE:
MSMg01no057_i21.g1 PHD_FILE: MSMg01no057_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:32 2005
         (191 letters)



>mm_chr5_99048397_99048988
          Length = 592

 Score =  300 bits (155), Expect = 4e-86
 Identities = 182/197 (92%), Gaps = 11/197 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacac-attaaaaaggacatatnagnttttgaagtcacaagtctagagagacaatagg 59
           ||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacacaattaaaaaggacatattagtttttgaagtcacaagtctagagagacaatagg 260

                                                                       
Query: 60  attttcatttgctgtttataagggaagtcttaattgtgatagttgctcttgattggattg 119
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttcatttgctgtttgtaagggaagtcttaattgtgatagttgctcttgattggattg 320

                                                                       
Query: 120 agacatctttttt-----atgaagaaagcatgctttgtctgtctccgagggtgctctcaa 174
           ||||||||          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacatct-----ggaagatgaagaaagcatgctttgtctgtctccgagggtgctctcaa 375

                            
Query: 175 aggtgattggaccatga 191
           ||| |||||||||||||
Sbjct: 376 aggcgattggaccatga 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 592
Length adjustment: 8
Effective length of query: 183
Effective length of database: 584
Effective search space:   106872
Effective search space used:   106872
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)