Query= MSMg01no057_m06.b1 MSMg01no057_m06.b1 CHROMAT_FILE:
MSMg01no057_m06.b1 PHD_FILE: MSMg01no057_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:49 2005
(499 letters)
>mm_chr5_17803014_17803912
Length = 899
Score = 826 bits (427), Expect = 0.0
Identities = 480/499 (96%), Gaps = 4/499 (0%)
Strand = Plus / Plus
Query: 3 gaattcccattctattgcgccaagactcactaatcacagatcagaaagttcccttaactc 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcccattctattgagccaagactcactaatcacagatcagaaagttcccttaactc 262
Query: 63 tggctgcctcaagtaagaagaaaatacatacccagattgctgccaaggtgaattgttaaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tggctgcctcaagtaagaagaaaatacatacccagattgctgccaaggtgaattgttaaa 322
Query: 123 tactccagaacagcaaccttgcaaatcaggcagatagagataaaacaacgaacaagcaga 182
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tactccagaacagccaccttgcaaatcaggcagatagagataaaacaacgaacaagcaga 382
Query: 183 tgaaaacagccaaaaagtgttcaaagcaaaaaatgaccatcttctaggggcaacatgagc 242
|||||||||||| |||| ||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 383 tgaaaacagccacaaagcgttcaaagcaaaacatgaccatcttctaggggcaacgtgagc 442
Query: 243 ctggtcaggaaggtgagtggg--tggacctggggttcctcacactataaggtatcgcaag 300
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 443 ctggtcaggaaggtgag--ggaatggacctggggttcctcacactataaggtatagcaag 500
Query: 301 tagcttccaaagagtaaaagaccagtcttgagtttggaggtactgtcaaatggtttcaga 360
|| ||||| |||||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct: 501 taacttcctaagagtaaaaaaccagtcttgagtttgaatgtactgtcaaatggtttcaga 560
Query: 361 tcaatgctactagaaaaataaagcccaatgacatagaaatcataattttcaagccaattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaatgctactagaaaaataaagcccaatgacatagaaatcataattttcaagccaattg 620
Query: 421 ctacaagctcataaaagcatactttctggctcttcttgttctggacatgttattgcaggt 480
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ctacaagctcataaaagcatgctttctggctcttcttgttctgggcatgttattgcaggt 680
Query: 481 cagcccactgtcataatgt 499
|||||||||||| ||||||
Sbjct: 681 cagcccactgtcgtaatgt 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_m06.g1 MSMg01no057_m06.g1 CHROMAT_FILE:
MSMg01no057_m06.g1 PHD_FILE: MSMg01no057_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:49 2005
(446 letters)
>mm_chr5_17897220_17898067
Length = 848
Score = 812 bits (420), Expect = 0.0
Identities = 444/460 (96%), Gaps = 14/460 (3%)
Strand = Plus / Minus
Query: 1 atggcagttcttccttccttccttccttccttccttccttccttccttccttccttcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 atggcagttcttccttccttccttccttccttccttccttccttccttccttccttcctt 725
Query: 61 cctt------------cctccctccctccctccctcccttccttccttcatttctttgtt 108
|||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ccttccttcctccctccctccctccctccctccctcccttccttccttcatttctttgtt 665
Query: 109 tcttttttcttttctttttaattttatttgtttgagaaataagtgctggaggcaccttcc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tcttttttcttttctttttaattttatttgtttgagaaataagtgctggaggcaccttcc 605
Query: 169 agcctagcatcttcttcttatgataatgggaacactgcagcagttactgaggtggctcca 228
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 604 agcctagcatcttcttcttatgataatggaaacactgcggcagttactgaggtggctcca 545
Query: 229 tgcattgtggtgtttcccaatcagtttttttcaggcaacactaacaatattttctgcccc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgcattgtggtgtttcccaatcagtttttttcaggcaacactaacaatattttctgcccc 485
Query: 289 cacaatgagtgtagaagacagttctccctacagtgacaactgacaataaaattttgcttt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cacaatgagtgtagaagacagttctccctacagtgacaactgacaataaaattttgcttt 425
Query: 349 atatatttagctaattagaagtatagaagatatccatttcttatatataattttaggacc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atatatttagctaattagaagtatagaagatatccatttcttatatataattttaggacc 365
Query: 409 tcggcagtttgttgc--ttttttttacattattttttctt 446
||||||||||||||| |||||||||||||||||||||||
Sbjct: 364 tcggcagtttgttgcttttttttttacattattttttctt 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 848
Length adjustment: 10
Effective length of query: 436
Effective length of database: 838
Effective search space: 365368
Effective search space used: 365368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
