BAC Information

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BAC

Clone NameMSMg01-057O14
Chromosome5 (Build37)4 (Build37)
Map Location 122,908,437 - 122,908,768155,614,970 - 155,615,302
singlet/doubletsingletsinglet
Overlap geneAtp2a2
Upstream geneTmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7
Downstream geneIft81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057O14.T7 (MSMg01no057_o14.b1)MSMg01-057O14.TJ (MSMg01no057_o14.g1)
ACCAG284952AG284953
length664752
length of high quality
(start - end)
342 (43 - 384)333 (136 - 468)
definitionCHROMAT_FILE: MSMg01no057_o14.b1 PHD_FILE: MSMg01no057_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:01 2005CHROMAT_FILE: MSMg01no057_o14.g1 PHD_FILE: MSMg01no057_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:01 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(122,908,437 - 122,908,768)(155,614,970 - 155,615,302)
sequence
CTACTATTTCCAGAAGAGCGCGGAATTCACTCTACTTCCAGGGCTTTAAA
AAAAAAAAAAGTGGCTAAATACCAGCTGGTAGAAGGAGACTCTTGGACCG
CCATCAGCAGCGATGAACCACCATGCAGCAGCACCCACGGTGGCAGCGCC
AACATAACCTAGAAACAAAGCTGCAGGTTACCACACTGGCCAGAGCAGCT
GACCACAGACAGGGCGTTTCTGGTCTAAAAAGGAAATAGGCAATGTCTCT
AGAGTTTGTGAGGAAATGTTCCTGCTGACTCCAGCCCACGCCCTGCACTA
GGTGCCACAGAGCTAAAGAGCAAGCATAGGCTTCAGACAACAGGTGGAGG
TCAGGCCCATCCATCCCAGCAGACAGAACACACAAGGTTCTCCCCCAAAC
CAAGTCACACCAGTCTATAGGCAAACGGAGGTGACCTTGTTGGACACTAG
GTAACTGCACTGTTCCAGGTATGGCCAAGCAGAACCCTTTCAAAGAACTG
CCATTACAATGCTGGCCCCCACCCCTCAGCACCAGAGTTAGGTCTAAGGC
AGAGGCCATTCCTCATCATTCAGATTTCATTTCAGGAAATCTGCAAAGCT
GACACTGGGTTATCCACGGTCATAATCACCTAACCAACAGCAGAGCACAC
AGTTTACCTGGAAA
TTTTTTTGTTTTTTTTTGTTTTGTTGTTTTCGNTTTCCTTCCCCNCCNCC
CCCAAACACANNCCTATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTTGGCCCGCA
GGCCTCAGCCACTCAGGGATGTCACATGCCGATAAGCTAGTGGGGTGACT
AAGATCTGTGGCTCAAATCTACAACACCCCAGGTGTGAGCCTTCGTCATG
GAGTTGGGGGCAGAGGGGAGGGAGCAGGCAAGGGACATTGAGGTCATGGG
ATTCGCTTGTTTCCATTGCTCTGGGTCCTGTTCCCAGAAGGGCAAGTTTG
GTCCTTCTGAGAAGCAATGTCAGGGCCTGAGATCTGTAACCACTGAGGCC
CATCTCTGGGCAAAACTCAACACCTGCTAGGACATGGGGGTGAAGCTAGG
TATCCGAGTGAACTGAGTAGCCTTGTGACCCCCTGAGACCTCACTCTGTT
TTCTTCTCTATCAAAATAGCAACAGTACATTTGTTTGACACTATTCTGTT
GCTGTAATGAAAACGTGCCCCATCGGGCAGGATTTTTGGTCTGTCTTGTT
CTGTACTATTGCAGTGGCCCTTGTACTTGTAGTGCCTGGCACACCGTAGG
TGGACCCACTTTGTATAAAGCATTGCCATAAAAATGTTTTTTGTTTATTG
CCTCCCAACAAATAACCGCTGATTTGACCTTAGCCCCATTTTGTGTTTAT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_o14.b1 MSMg01no057_o14.b1 CHROMAT_FILE:
MSMg01no057_o14.b1 PHD_FILE: MSMg01no057_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:01 2005
         (342 letters)



>mm_chr5_122908227_122908968
          Length = 742

 Score =  611 bits (316), Expect = e-179
 Identities = 328/332 (98%)
 Strand = Plus / Plus

                                                                       
Query: 11  aaaaaaaagtggctaaataccagctggtagaaggagactcttggaccgccatcagcagcg 70
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 211 aaaaaaaagtggctaaataccagctggtagaaggagactcttggaccgccgtcagcagcg 270

                                                                       
Query: 71  atgaaccaccatgcagcagcacccacggtggcagcgccaacataacctagaaacaaagct 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atgaaccaccatgcagcagcacccacggtggcagcgccaacataacctagaaacaaagct 330

                                                                       
Query: 131 gcaggttaccacactggccagagcagctgaccacagacagggcgtttctggtctaaaaag 190
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 331 gcaggttaccacactggccagagcagctgactacagacagggcgtttctggtctaaaaag 390

                                                                       
Query: 191 gaaataggcaatgtctctagagtttgtgaggaaatgttcctgctgactccagcccacgcc 250
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 391 gaaataggcaatgtctctagagtttgtgaggaaatgttcctgctgaccccagcccacgcc 450

                                                                       
Query: 251 ctgcactaggtgccacagagctaaagagcaagcataggcttcagacaacaggtggaggtc 310
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 451 ctgcactaggtgccacagagctaaagagcaagtataggcttcagacaacaggtggaggtc 510

                                           
Query: 311 aggcccatccatcccagcagacagaacacaca 342
           ||||||||||||||||||||||||||||||||
Sbjct: 511 aggcccatccatcccagcagacagaacacaca 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no057_o14.g1 MSMg01no057_o14.g1 CHROMAT_FILE:
MSMg01no057_o14.g1 PHD_FILE: MSMg01no057_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:01 2005
         (333 letters)



>mm_chr4_155614770_155615502
          Length = 733

 Score =  636 bits (329), Expect = 0.0
 Identities = 332/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgcttggcccgcaggcctcagccactcagggatgtcacatgccgataagctagtgggg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 533 tttgcttggcccgcaggcctcagccactcggggatgtcacatgccgataagctagtgggg 474

                                                                       
Query: 61  tgactaagatctgtggctcaaatctacaacaccccaggtgtgagccttcgtcatggagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgactaagatctgtggctcaaatctacaacaccccaggtgtgagccttcgtcatggagtt 414

                                                                       
Query: 121 gggggcagaggggagggagcaggcaagggacattgaggtcatgggattcgcttgtttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gggggcagaggggagggagcaggcaagggacattgaggtcatgggattcgcttgtttcca 354

                                                                       
Query: 181 ttgctctgggtcctgttcccagaagggcaagtttggtccttctgagaagcaatgtcaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgctctgggtcctgttcccagaagggcaagtttggtccttctgagaagcaatgtcaggg 294

                                                                       
Query: 241 cctgagatctgtaaccactgaggcccatctctgggcaaaactcaacacctgctaggacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cctgagatctgtaaccactgaggcccatctctgggcaaaactcaacacctgctaggacat 234

                                            
Query: 301 gggggtgaagctaggtatccgagtgaactgagt 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gggggtgaagctaggtatccgagtgaactgagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)