ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCTTTGCCCTGCAAAAGTTTGTAAACAAGGAAAACATTTTAG
TTTCCTTAAGGCACTGATTTTCCCCAATTATGTGTTTTTGAAGAAAAACC
TATTCTGTTTTGATTAACATTATTTTAAACTCAGCATTCCAATATGATTC
TCTCAATATATATTGATTATCTTCAATTATTTTTATTTTTTCAGTTTTTT
TACATTGGATATTTTTGTTATTTACATTTCAAATGTAACCCCCTTTCCTC
TTTCCCCTCCCCTCCGAAAAAGTCCCCTCCTCCTCTCCCCTCCTCCTCCC
CATGCTCTTTTTTTTCCTACTCCCGCCTCCTGGCCCTGAGATTCCCCTAC
ATTGGGGCATAGATTAGAACCTTCACAGGACCAAGGGCCTCTCCTCCTAT
TGATGTCCAACAAGGCCATCCTCTGCAACATATGCAGGTGGAGCCATGAG
TCCTACCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCAGGGAGCTTCGG
GGGTACTGTTTGGTTCATGTTGTTTTTCTTCCTATGGGGCTGCAAACCCC
TTCAGCTCTTTATGACCTTTCTCTAGCTCCTTCATTGAGGACTCTATGTT
CAGTCCAATGGACAATTATTTTTATTAATTATGGATGTTTGAAGATTATT
GG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGATCTTCAGAAGAAATGTTA
CAGAAAATCATAAATTATATACCATCCTAGAAACCGACAGCATTTTAATA
TAGGTCAATACTGTGACCGAATGCCCCGCAGAAACTATTTAGAGGGAAAG
GATGAATTCTGCCCCCTGGTTTTGGGAATACGTGGTTCTGGGAAAGGGAG
TATGCCATGACTGTCACAGCTGGAAACCTGAAGTAGCTTCAGAATCAGAA
AGCAGTGCTTTCAGCTTGGAACCTGGATAGGTTAACATGGTCATGTTAAC
TTATATTCCTGCATCTAATGTCTAGGAGCCACATCAAAAATTTCACGATC
TCCTGAAAGAGCATCAATATTAGGGAACCAGGTGTTCAGACAGACAAGCA
TATAAGGGGCATTTCAGACCCAAAGGATTCTAGTTGCACAGAGAGGTGGG
ATTTTTAACGATTATTCATGTGAGTGTAGTTAATATTATTTATTACCCTA
ACATTTGTTTCTGTTACATAAAATAATATATACAGGAGCTTGGCATATGG
TGTAGTCAATAAAGTACCTTCTGTGCCAGCATGATGCCTTAAGCTCAGAT
CACAGTATCCTCTTAAAAGTTATGCAGAGTTAGGCATATCTATAATTTCA
GG

Query= MSMg01no058_f17.b1 MSMg01no058_f17.b1 CHROMAT_FILE:
MSMg01no058_f17.b1 PHD_FILE: MSMg01no058_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:35 2005
         (232 letters)



>mm_chr5_41372911_41373542
          Length = 632

 Score =  431 bits (223), Expect = e-125
 Identities = 229/231 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attatgtgtttttgaagaaaaacctattctgttttgattaacattattttaaactcagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attatgtgtttttgaagaaaaacctattctgttttgattaacattattttaaactcagca 259

                                                                       
Query: 61  ttccaatatgattctctcaatatatattgattatcttcaattatttttattttttcagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttccaatatgattctctcaatatatattgattatcttcaattatttttattttttcagtt 199

                                                                       
Query: 121 tttttacattggatatttttgttatttacatttcaaatgtaaccccctttcctctttccc 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tttttatattggatatttttgttatttacatttcaaatgtaaccccctttcctctttccc 139

                                                              
Query: 181 ctcccctccgaaaaagtcccctcctcctctcccctcctcctccccatgctc 231
           |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 138 ctcccctccgaaaaagccccctcctcctctcccctcctcctccccatgctc 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no058_f17.g1 MSMg01no058_f17.g1 CHROMAT_FILE:
MSMg01no058_f17.g1 PHD_FILE: MSMg01no058_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:35 2005
         (609 letters)



>mm_chr5_41267515_41268523
          Length = 1009

 Score = 1154 bits (597), Expect = 0.0
 Identities = 606/609 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggatcttcagaagaaatgttacagaaaatcataaattatataccatcctagaaaccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggatcttcagaagaaatgttacagaaaatcataaattatataccatcctagaaaccg 260

                                                                       
Query: 61  acagcattttaatataggtcaatactgtgaccgaatgccccgcagaaactatttagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcattttaatataggtcaatactgtgaccgaatgccccgcagaaactatttagaggg 320

                                                                       
Query: 121 aaaggatgaattctgccccctggttttgggaatacgtggttctgggaaagggagtatgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggatgaattctgccccctggttttgggaatacgtggttctgggaaagggagtatgcc 380

                                                                       
Query: 181 atgactgtcacagctggaaacctgaagtagcttcagaatcagaaagcagtgctttcagct 240
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgactgtcacagctgttaacctgaagtagcttcagaatcagaaagcagtgctttcagct 440

                                                                       
Query: 241 tggaacctggataggttaacatggtcatgttaacttatattcctgcatctaatgtctagg 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaacctggataggctaacatggtcatgttaacttatattcctgcatctaatgtctagg 500

                                                                       
Query: 301 agccacatcaaaaatttcacgatctcctgaaagagcatcaatattagggaaccaggtgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccacatcaaaaatttcacgatctcctgaaagagcatcaatattagggaaccaggtgtt 560

                                                                       
Query: 361 cagacagacaagcatataaggggcatttcagacccaaaggattctagttgcacagagagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagacagacaagcatataaggggcatttcagacccaaaggattctagttgcacagagagg 620

                                                                       
Query: 421 tgggatttttaacgattattcatgtgagtgtagttaatattatttattaccctaacattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggatttttaacgattattcatgtgagtgtagttaatattatttattaccctaacattt 680

                                                                       
Query: 481 gtttctgttacataaaataatatatacaggagcttggcatatggtgtagtcaataaagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttctgttacataaaataatatatacaggagcttggcatatggtgtagtcaataaagta 740

                                                                       
Query: 541 ccttctgtgccagcatgatgccttaagctcagatcacagtatcctcttaaaagttatgca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccttctgtgccagcatgatgccttaagctcagatcacagtatcctcttaaaagttatgca 800

                    
Query: 601 gagttaggc 609
           |||||||||
Sbjct: 801 gagttaggc 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)