BAC Information

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BAC

Clone NameMSMg01-058L02
Chromosome5 (Build37)
Map Location 50,287,115 - 50,287,558
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041668, LOC100041659, EG433885
Downstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058L02.T7 (MSMg01no058_l02.b1)MSMg01-058L02.TJ (MSMg01no058_l02.g1)
ACCAG285547AG285548
length710708
length of high quality
(start - end)
311 (63 - 373)431 (67 - 497)
definitionCHROMAT_FILE: MSMg01no058_l02.b1 PHD_FILE: MSMg01no058_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:00 2005CHROMAT_FILE: MSMg01no058_l02.g1 PHD_FILE: MSMg01no058_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTATACGACTACTATTCGNAAGGATCCGCGGATTCTTTGT
TTTTCCTGAGCCCCATATTTTAATGGGGTTATTTGATTTTCTGGAGCCAC
CTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAG
GATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTTTTTTGTCTTATTGA
CAGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATGAGGTCCCATATG
TCAATTCTCGATCTTACAGCCCAAGTCATTGCTGTTCTATTCAGGAATTT
TTTCCCCTGTGCTCATATCTTCAAGGCCTTCCCCCACATTCTCCTCTACA
AGTTTCAGTGCCTCTGGTTTTATGCGAAGTTCTTCGATCCACTTATACTT
TGACTTTATTATAAGGAGATAAGTATGTATCAATTTGGATTCTTCTATAT
GATAACACCCTGTTGTGCCAGCTCCAATTGTCCAAAATGCTGTTTTCCCT
TACACTGCCCTACATTTAGCTCCCTCGCCCAAAACTAAGTGATCCTCTGT
GTGTGCAATCACCCTATTGGCCCACTTCTTTTTTCCTCCCGACCCCACTG
CATTGCCATTATTCCTTTCCCCCCGCCCCCTTCCCTAAATATAGATACGA
ACAATTTTTTTTCCGCCTACCTCCGGGTTGATCCCGCGCTAACCCTTATT
TTCTGTTTTC
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCCTCCCTGTACTTTTTGGTGGTGTGTGGGTGG
AGGGTTTATAAGAAGCTGCGGCTTAGCAAAGGAAGGAACAATCAAGGCTG
TGTGCGACATCAAAGCTTCTCTTGACGTTAATCAAAAGCCGACTTAATGT
TTTATTCTGTGTCATATTGCCTTTTTATACGGTCTAAAGAGCCACCTGGG
ATGTTATACCTTAAACATTTCATTTTCCTATAAGTATCAGACACCCTGAA
GCAGCAACAACAAAAACAGTGAGTTGTAAGGCAGAAATAGCCAGTGCTAT
AAGGTCTCTGAAAATTTAATCTCAAGTGATCAATTCCTGTGAAACGTACT
CTTTGATTATTTACTATAGCCTTTAAATATCAATCGTTCTTTCTACTAGA
ATATTAAATATAATTCCTTCCAATATCTTAAATACTTTATTCTAAAGTAC
TTTGCTCATACATAATTTGTAGGAACCATTGAACGCTTTTAGGCAAATAT
AGCCCGTTATGTTCCATTCCATTCATTAAACAAACATATTGTTTAAATTT
AAGTCCAGAACAACCCACCCTAAATCTTGGAAGGCACTTTGAACAATACA
TGCTCATAATAACCTACTCTTGGCCTCTTTCCTAGTAAAATGTTATTTCG
TTTTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_l02.g1 MSMg01no058_l02.g1 CHROMAT_FILE:
MSMg01no058_l02.g1 PHD_FILE: MSMg01no058_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:00 2005
         (431 letters)



>mm_chr5_50287082_50287911
          Length = 830

 Score =  774 bits (400), Expect = 0.0
 Identities = 427/444 (96%), Gaps = 13/444 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctccctgtactttttggtggtgtgtgggtggagggtttataagaagctgcggcttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttcctccctgtactttttggtggtgtgtgggtggagggtttataagaagctgcggcttag 418

                                                                       
Query: 61  caaaggaaggaacaatcaaggctgtgtgcgacatcaaagcttctcttgacgttaatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 caaaggaaggaacaatcaaggctgtgtgcgacatcaaagcttctcttgacgttaatcaaa 358

                                                                       
Query: 121 agccgacttaatgttttattctgtgtcatattgcctttttatacggtctaaagagccacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 357 agccgacttaatgttttattctgtgtcatattgcctttttatacggtctgaagagccacc 298

                                                                       
Query: 181 tgggatgttataccttaaacatttcattttcctataagtatcagacaccctgaagcagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgggatgttataccttaaacatttcattttcctataagtatcagacaccctgaagcagca 238

                                                                       
Query: 241 acaacaaaaacagtgagttgta-------------aggcagaaatagccagtgctataag 287
           ||||||||||||||||||||||             |||||||||||||||||||||||||
Sbjct: 237 acaacaaaaacagtgagttgtagggcagaaatgccaggcagaaatagccagtgctataag 178

                                                                       
Query: 288 gtctctgaaaatttaatctcaagtgatcaattcctgtgaaacgtactctttgattattta 347
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gcctctgaaaatttaatctcaagtgatcaattcctgtgaaacgtactctttgattattta 118

                                                                       
Query: 348 ctatagcctttaaatatcaatcgttctttctactagaatattaaatataattccttccaa 407
           ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ctagagcctttaaatatcaatggttctttctactagaatattaaatataattccttccaa 58

                                   
Query: 408 tatcttaaatactttattctaaag 431
           ||||||||||||||||||||||||
Sbjct: 57  tatcttaaatactttattctaaag 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 830
Length adjustment: 9
Effective length of query: 422
Effective length of database: 821
Effective search space:   346462
Effective search space used:   346462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)