BAC Information

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BAC

Clone NameMSMg01-058N06
Chromosome5 (Build37)
Map Location 135,887,573 - 135,887,918
singlet/doubletsinglet
Overlap geneHip1
Upstream geneGtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121
Downstream geneCcl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058N06.T7 (MSMg01no058_n06.b1)MSMg01-058N06.TJ (MSMg01no058_n06.g1)
ACCAG285650AG285651
length694689
length of high quality
(start - end)
344 (69 - 412)---
definitionCHROMAT_FILE: MSMg01no058_n06.b1 PHD_FILE: MSMg01no058_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:11 2005CHROMAT_FILE: MSMg01no058_n06.g1 PHD_FILE: MSMg01no058_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTGCGGCGCTAAAGACTACTATCGGAGAGGACCGCGGAATTCTAGGT
TTCATTGCACAGCCCAGCATATCGCTAAGCACTGTTTTACTTCCCAGTTT
TTTTTTTTCCAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTC
AGACATTCCAGAAGCGGGAGTCAGATCTCGTTATGGATGGTTGTGAACCA
CCATGTGGTTGCTGGGATTTGAACTCCAGACCTTCGGAAGAGCAGTCGGG
TACTCTTACCAACTGAGCCATCTCACCAGCCCACTTCCCAGTTTTGAAAG
AGTTTAAGTTGTTAGGTTGGCCCTGAATTCATTTTGTGGAAGTTTACAGT
AAACTTTCAACGCTTCTTCTGTCTCAGACTCCAGAACAGTTGGGAGGAGA
GACATGGGCCATCAGACCCAGCTCCAGGGCTGGTCTGAATATTCTTGCAT
CCCATTTCTCCAGGTAAGCCTGTTCACTTTTTGGTCATTGTGGCCTTGTG
CGCAGGCGTATATGTGCGCGCATACATTTGTGTGTGTGTCTGAGCGTATG
TGCATACTGTTCACGTGTGTGTGTATGCTGAATGCGGTGGTAGTTCAGTG
TTAAGGGCACCACCTCGCCCTCGCAAGTACCCGAACTGGACTTTCTGATC
CTCTAAGGCCCGCTATCAACTGGGTCCCACCCTCCGGGGAAATG
TGATGCGTTAGGCCTGGAGGCGCCTGTTCGAACAGGGGGGTGAACTATAG
ATTGTCCAAACAATCCAGGCCAGTTAGGGTTCTATAGTGAGACCCGTCTC
AAAACAAACCAAATTACTCAGGTAAACAAAGATATAAAAACCAGCCGGTA
AGTGGTGGTGCATGCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTG
GATTTCTGACTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAG
CCAGGGGTACACAGAGAAACCCTGTTTCTTAAATCAACCTACCAAAATAA
AACATATTTTTTTTCCCCCAACCCCGCGCATGGTGGCACACATTTCCGTA
TCTCACCCGCCCTTACATGCCTATTTATACATTACTGTCATACAGACTGT
ATTGGATAGATTTGTGTCCACTTGACTCCACTGGAGCTATCTCAGAAACA
GGAACATTCAATTGTGGAACCGCTTCCCTGATACCCTCCTGCAAAGCAAT
TTCATAATTATTTGAAGACGGGGAAACGCCCCTTGTTGCCGATGCCATCC
CCCCGCGTTGGTTGCCCCGCCTTCTATTACAGATTACGTTGAGCAGCGCG
GCCGAAAAAGACCCCACCCGGTCCCCCTGCAAATCCCCTGGTTTCCTGCT
CCTGCTTTATACCATCTCCGACTTCTATGGCTAAAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_n06.b1 MSMg01no058_n06.b1 CHROMAT_FILE:
MSMg01no058_n06.b1 PHD_FILE: MSMg01no058_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:11 2005
         (344 letters)



>mm_chr5_135887376_135888119
          Length = 744

 Score =  605 bits (313), Expect = e-177
 Identities = 337/349 (96%), Gaps = 9/349 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcgctaagcactgttttacttcccagtttttttttttcca--gatttatttatt--- 55
           |||||||||||||||||||||||||||||||||||||||   |  ||||||||||||   
Sbjct: 198 atatcgctaagcactgttttacttcccagtttttttttt---aaagatttatttatttat 254

                                                                       
Query: 56  -atatgtaagtacactgtagctgtcttcagacattccagaagcgggagtcagatctcgtt 114
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 255 tatatgtaagtacactgtagctgtcttcagacattccagaagagggagtcagatctcgtt 314

                                                                       
Query: 115 atggatggttgtgaaccaccatgtggttgctgggatttgaactccagaccttcggaagag 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atggatggttgtgaaccaccatgtggttgctgggatttgaactccagaccttcggaagag 374

                                                                       
Query: 175 cagtcgggtactcttaccaactgagccatctcaccagcccacttcccagttttgaaagag 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cagtcgggtactcttaccaactgagccatctcaccagcccacttcccagttttgaaagag 434

                                                                       
Query: 235 tttaagttgttaggttggccctgaattcattttgtggaagtttacagtaaactttcaacg 294
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 435 tttaagttgttaggttggccctgaattcattttgtggaagtttacagcaaactttcaatg 494

                                                            
Query: 295 cttcttctgtctcagactccagaacagttgggaggagagacatgggcca 343
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cttcttctgtctcagactccagaacagttgggaggagagacatgggcca 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)