Query= MSMg01no059_b17.b1 MSMg01no059_b17.b1 CHROMAT_FILE:
MSMg01no059_b17.b1 PHD_FILE: MSMg01no059_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:32 2005
(627 letters)
>mm_chr5_60386311_60387337
Length = 1027
Score = 1127 bits (583), Expect = 0.0
Identities = 616/627 (98%)
Strand = Plus / Plus
Query: 1 cactgtaaaaacaattttcactaggggattgtgcatttacctaagagaataaaatacttg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 cactgtaaaaacaattttcactaggggattgtgcatttatctaagagaataaaatacttg 260
Query: 61 ctgttaaagctgaagaatcagagatcagagattggaatccacaaaacccacataaaaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgttaaagctgaagaatcagagatcagagattggaatccacaaaacccacataaaaggc 320
Query: 121 tgttagacatgccaacaagcctgcgttcctagaacttgggaggcagacacagacagtatc 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttagacatggcaacaagcctgcgttcctagaacttgggaggcagacacagacagtatc 380
Query: 181 aaggtccgatacgggagacatatcagcaaggtttgagttcagagataagtccctccggaa 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 aaggtctgatacgggagacatatcagcaaggtttgagttcagagataagtccctctggaa 440
Query: 241 ataacgccatttttagaagtgtaggacatttgaggaaggcagccagtgtcaacctctgga 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ataacgccatttttagaagtgtaggacatttgaggaaggcacccagtgtcaacctctgga 500
Query: 301 ttccacatgcacatgccaaaatctgcttgcctcacaaacatatgtgcctcgacgttcata 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ttccacatgcacatgccaaaatctgcttgcctcacaaacatatgtgcctcgacgctcata 560
Query: 361 cagaagcacacacaccacacatagacaaaccggcaataagtcagatttttcaatcttaac 420
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 cagaagcatacacaccacacatagacaaaccggcaataagtcagatttgtcaatcttaac 620
Query: 421 tatcttgtgaccttagtaatttcaaaatgaatcttataggatgaaatgcaagcaacaaaa 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taccttgtgaccttagtaatttcaaaatgaatcttataggatgaaatgcaagcaacaaaa 680
Query: 481 tgttagctttccaacctgtgatggaggtgcttcttttacatatcaatgtgaacactagcc 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttagctttccaacctgcgatggaggtgcttcttttacatatcaatgtgaacactagcc 740
Query: 541 accaggttctccctacagtcccttagtcccgaccgggtacaaggtcctcctggcctgccc 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 accaggttctccctacagtcccttagtcccgaccaggtacaaggtcctcctggcctgccc 800
Query: 601 tgcaccctaaacttgtccagccctagg 627
|||||||||||||||||||||||||||
Sbjct: 801 tgcaccctaaacttgtccagccctagg 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_b17.g1 MSMg01no059_b17.g1 CHROMAT_FILE:
MSMg01no059_b17.g1 PHD_FILE: MSMg01no059_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:32 2005
(632 letters)
>mm_chr5_60450069_60451100
Length = 1032
Score = 1052 bits (544), Expect = 0.0
Identities = 599/642 (93%), Gaps = 39/642 (6%)
Strand = Plus / Minus
Query: 1 aattcacactgataaaaatgtgtcaagaaaatatgcttcaaagacctttctggttttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aattcacactgataaaaatgtgtcaagaaaatatgcttcaaagacctttctggttttgtt 644
Query: 61 tttg----------tttttttgttttctatgtagggattaatctaactgttcaaaacttg 110
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tttgtttttttgtttttttttgttttctatgtagggattaatctaactgttcaaaacttg 584
Query: 111 tcagttcaggtagtttagttggtgaaggttttctcgaacattttatgtttatgttaagtc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tcagttcaggtagtttagttggtgaaggttttctcgaacattttatgtttatgttaagtc 524
Query: 171 tacttatatatcaattatataatattctcctacctttcagttgtctcctggtgaccaaga 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tacttatatatcaattatataatattctcctacctttcagttgtctcctggtgaccaaga 464
Query: 231 gaaataaaccagatttatttatatgatccatgagatgtgcctgtgactctggacttttaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaaataaaccagatttatttatatgatccatgagatgtgcctgtgactctggacttttaa 404
Query: 291 tagttaggtaaatggaagaagatgacagaaacataaggatagggtccaccttaggaatag 350
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 403 tagttaggtaaatggaagaagatgacagaaacacaaggatagggtccatcttaggaatag 344
Query: 351 ttgttaaatctcactcagaaacattcttagagattgtgaaaaggccaccttgacaatagt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttgttaaatctcactcagaaacattcttagagattgtgaaaaggccaccttgacaatagt 284
Query: 411 tagcactcctgtcttccacaaacaaaagaaaacaaaacagaaacaaacaaacaaaacaaa 470
|| |||||||||||||||||||||||| ||||
Sbjct: 283 taacactcctgtcttccacaaacaaaa-----------------------------caaa 253
Query: 471 caaaaaaaccaaacaacaaaacaatataaaataaaacaaacaaacaaataaacaaaaaac 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 caaaaaaaccaaacaacaaaacaatataaaataaaacaaacaaacaaataaacaaaaaac 193
Query: 531 ccattggtcggtataccttccataaaacagacaatatgtagtgattgataagaccccaat 590
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ccattggttggtataccttccataaaacagacaatatgtagtgattgataagaccccaat 133
Query: 591 ggaggaactagagaaagtacccagggagctgaaggggtctga 632
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaggaactagagaaagtacccagggagctgaaggggtctga 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
