BAC Information

Click to search

BAC

Clone NameMSMg01-059C21
Chromosome5 (Build37)
Map Location 74,657,387 - 74,657,551
singlet/doubletsinglet
Overlap genenone
Upstream geneOciad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18, Usp46, 2700023E23Rik, Rasl11b
Downstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059C21.T7 (MSMg01no059_c21.b1)MSMg01-059C21.TJ (MSMg01no059_c21.g1)
ACCAG285919AG285920
length782770
length of high quality
(start - end)
---167 (81 - 247)
definitionCHROMAT_FILE: MSMg01no059_c21.b1 PHD_FILE: MSMg01no059_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:37 2005CHROMAT_FILE: MSMg01no059_c21.g1 PHD_FILE: MSMg01no059_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGTCTATATTTGCGGACGCTATCGACTCCTGTACTCAGAAATCCGC
GGGGTTGGCGTTTTTTCCCAAGACCAGCGCTTCGGGGAACCTATCGGGCC
ACCCCGGGTACAGGCTCGGGTGGTCGCTCTGTACGCTTTATACCGGGCTC
ACCTTCTCGCTCGGGGGCTCACGTGGGCAGGCTCGGGGTTGTGGGCCCCG
GGGGCCGGGGGAGGGGAGCGGGAGGGGGGAGGGGGGCGGGGTACGGGGGT
GCGGTTATATGATCGATGTGCGGGGGTGGGCGGGCGTTGTCTGGGTGGGG
GGGGGAGGGGGGGGGGCGGCGTTTTTTATAGGGGGAGGGCGTGGTTGGGG
GGCTTGTGGGGGGGTGGGGGGTGGAGGCGCGGGGGGGTGGAGGGGGAGGG
GGGGGGGGGGGAGCGCGGGGGGTGGCCCCCGTGGGGGGGGCTCGAGAGGG
GCGCGCCTGGAGGCTAGGGGGCGGGGAGGGGGGGGGCGGAGGCGGCCGGG
GCGGGGGGCGGCGGCGGGGGGGGGAGGGGGGTAGGGGGGCGGGGGCCGCC
AGGGGAGGCGGCGGGGGGGGGGGGGTGGCGGGGGGGGGTGGGTCCTGGGG
GCGTGCCGGCAGGGCGGGGAGGCGGGGGGTGGCGGGGCGCGGGAGCGGGC
GGACGGTCCCTAGCCCGACGGCGCGCCCGCCCGCGGCCACCCGCCCCCGC
CACGGTACAGCATGGGCCGCCGCCGCCGCCGCCGCCGCGCAACCCACTCG
CGCGCCCCCCTCCACCCCATCTTGCTTTCCTG
AAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTCTGCCTGTGTTCTGCT
TCTCCCAATAACTATGCACATCCCATGAAGTGAGGAAAGAGGTGACTCTC
AGGGTGAGTACCAGGCTATAGTTGTGAATGGGGCCTTTGGCTGGCAAGCA
GGTTGTGGGTGGCATGGTGAAGGGATAGGGGTGGAAATTGGAAAACGGCA
GGTGGTGAATGTCACTGGGACGGTTCGCGAAATGGGGGAGGGCAGAAACG
GGGGAAAGGATGGGGGAAAGGATTGTGATTAAAGGAAAAAAGGGAAAAAA
GGGGGGGAAAGGGGGAAAGGGGAAAAAGGGGGGGAAGGGGGGGAATGAAA
AAAGGGAAAAAAAAAAAAGAAAGGTCCACCCCAAGGTGGACTGAGGAATC
CGTAACCCCGGAAATAAAAAAAAACTCTATGGCCGTCGTGTTTATCGAAA
TGGTCTTAACCACCCTCTGGGCTTATTCACAAAACCTTCATTTTCAAACC
ATAAAAAAAAGTAAAATGGCGGTAAAACACAAAAAGGGGTAAAACAAAAA
CAGGAGGGGCGAGGAACCCACCACCAAGGGTACCCCAGCTTATTGGAAGA
AAAACAAAAAAAACAAGGGTACGGGCTTAAAAAAAGCGCCGCCAGCCCCC
TTAAATTTCTCCACGGGTGTCTCTCTGANCGTTTTACTTGTCCACATCCA
GGAAAAAAACGGGACAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_c21.g1 MSMg01no059_c21.g1 CHROMAT_FILE:
MSMg01no059_c21.g1 PHD_FILE: MSMg01no059_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:37 2005
         (167 letters)



>mm_chr5_74657187_74657755
          Length = 569

 Score =  246 bits (127), Expect = 7e-70
 Identities = 155/165 (93%), Gaps = 2/165 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtctgcctgtgttc--tgcttctcccaataactatgcacatcccatgaagtgaggaaa 58
           ||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 365 atgtctgcctgtgttctgtgcttctcccaataactatgtacatcccatgaagtgaggaaa 306

                                                                       
Query: 59  gaggtgactctcagggtgagtaccaggctatagttgtgaatggggcctttggctggcaag 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 305 gaggtgactctcagggtgagtaccaggctatagttgtgaatggggcctttggcaggcaaa 246

                                                        
Query: 119 caggttgtgggtggcatggtgaagggataggggtggaaattggaa 163
           | ||| |||||||||||| |||||| |||||||||| ||||||||
Sbjct: 245 cgggtcgtgggtggcatgatgaaggaataggggtgggaattggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 569
Length adjustment: 8
Effective length of query: 159
Effective length of database: 561
Effective search space:    89199
Effective search space used:    89199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)