ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATGCGCG
GAATTCCACTGTTGACTTCCTGTGGTGATGAGCAAAGATGTGGAAGTTTA
AGCTAAATAAACCCTTTCCTCCCCAACTTGCTTTTTGGTCATGATGTTCT
TGAAAGAAAAAAAAAAAACAAAAACAAAAACTGTGAGAAGATAGTCACTT
CATAAAATCAATCTATATAGATAAAGAAATGCCATATCTCTATATATATT
TGCATATAGATGTATGTGCATATGCACACATACATCATGCCACATACATT
AATTTTTGCTGCTGTGATAAAATATCCTGACAATAAGCAAAGTACAAGAA
AATGGCTACATTTTGCTTATCACTCCAGGCTATAGTCTGTCATTGCAGGA
AACACCAAAGCAGGAGCTTGAGATAATATGTCACAACCCCACCAAAAAAC
AAATGTGAATAGAATGCTCACTTGATTGATTAGACTCATTCTTATATACA
GTTCAGGTCCCGATGTCTAGGGAATTGTGGCATCCTCAGTAGACTAAGTC
TGCCATAATCAATTAACTTAAGAGACTCTCCCACCAACATCTCCATTATT
TGTCACCAAATGTATACAAAATTCTTCATGGAGACTATTTTCCCAGGTGA
TTCTGGGTTGTCTAGAGTTGAAAATGAAAGATAGCCAATCACAAAGAA

AATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGTCCTGACTTCCTTCCAGGATGAACAA
TGATGTGAAAGAATGAGCACAGAAAACTTTTCCTTCCCAAGGAAGGTTGC
TTTGGATCATGATGTCTTATCACAGCATGCAACCCTAAGACAGGATTGTA
TATATAATAATATATATATATATATATATATATATATATATATATATATA
TATATATATATATCATAATGCTCACTACTGACTTTTAATATTCAGAGGGG
GAGAAAAGACACATGTGTTTTTTAGGAGGCTTTTTATTTCTTTATAGATG
CTACATTCACAGGCTTTCACCCCTATGCATAAAGCATGACTATGCATAAA
GCCATGTATTATACCTTACAACATAGTTCCAATAATATCTAATTTTAATT
GGAGAACGATGTACAGGAGAGTGAATGATTCTAGGATCTATATAACTGAG
TGATAATTCCTAGTTAAATTTTTGACGTCTCGCTTTGACATTCATCATAA
ATATGTTTGATTCAACCTGACCTTTGTCGTTCCCTTCCCCTATCTTATCC
TCCCATCTTACCTTACTCTCCCCTTTCCTTTCATATTACTATGCCTTTCA
CTCCATACCCTTTGCCTTTTATAGTTAATCCATTCCCATTATGCCCCACC
CTACTCACTT

Query= MSMg01no059_f13.b1 MSMg01no059_f13.b1 CHROMAT_FILE:
MSMg01no059_f13.b1 PHD_FILE: MSMg01no059_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:49 2005
         (600 letters)



>mm_chr5_84888145_84889144
          Length = 1000

 Score = 1021 bits (528), Expect = 0.0
 Identities = 571/592 (96%), Gaps = 11/592 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccactgttgacttcctgtggtgatgagcaaagatgtggaagtttaagctaaataa 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 592 gaattccactgttgacttcctgtggtgatgagcaaagatgtggaagtttaagctgaataa 533

                                                                       
Query: 64  accctttcctccccaacttgctttttggtcatgatgttcttgaaagaaaaaaaaaaaaca 123
           ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
Sbjct: 532 accctttcctccccaacttgcttcttggtcatgatgttcttgaaggaaaaaaaaaaaaaa 473

                                                                       
Query: 124 aaaa-----------caaaaactgtgagaagatagtcacttcataaaatcaatctatata 172
           ||||           |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 472 aaaaaaaaaaaaaaccaaaaactctgagaagatagtcacttcataaaatcaacctatata 413

                                                                       
Query: 173 gataaagaaatgccatatctctatatatatttgcatatagatgtatgtgcatatgcacac 232
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 412 gataaagaaatgccatatctccctatatatttgcatatagatgtatgtgcatatgcacac 353

                                                                       
Query: 233 atacatcatgccacatacattaatttttgctgctgtgataaaatatcctgacaataagca 292
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 352 atacatcatgccacatacattaatttttgctgctgtgataaaataacctgacaataagca 293

                                                                       
Query: 293 aagtacaagaaaatggctacattttgcttatcactccaggctatagtctgtcattgcagg 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aagtacaagaaaatggctacattttgcttatcactccaggctatagtctgtcattgcagg 233

                                                                       
Query: 353 aaacaccaaagcaggagcttgagataatatgtcacaaccccaccaaaaaacaaatgtgaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aaacaccaaagcaggagcttgagataatatgtcacaaccccaccaaaaaacaaatgtgaa 173

                                                                       
Query: 413 tagaatgctcacttgattgattagactcattcttatatacagttcaggtcccgatgtcta 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tagaatgctcacttgattgattagactcattcttatatacagttcaggtcccgatgtcta 113

                                                                       
Query: 473 gggaattgtggcatcctcagtagactaagtctgccataatcaattaacttaagagactct 532
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 112 gggaattgtggcatcctcagtagactaagtctgccataatcaattgacttaagagactct 53

                                                               
Query: 533 cccaccaacatctccattatttgtcaccaaatgtatacaaaattcttcatgg 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  cccaccaacatctccattatttgtcaccaaatgtatacaaaattcttcatgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)