Query= MSMg01no059_k15.b1 MSMg01no059_k15.b1 CHROMAT_FILE:
MSMg01no059_k15.b1 PHD_FILE: MSMg01no059_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:13 2005
(525 letters)
>mm_chr5_70005059_70005983
Length = 925
Score = 938 bits (485), Expect = 0.0
Identities = 512/521 (98%)
Strand = Plus / Plus
Query: 5 gaattctttactgtttcacatcaggcaaagttaggaatcatacctttaagtccttgcaac 64
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttactgggtgacatcaggcaaagttaggaatcatacctttaagtccttgcaac 264
Query: 65 attttagatcaaatgtacctgtttttaaatcagttgctttgtgaattatgtcaatggtcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attttagatcaaatgtacctgtttttaaatcagttgctttgtgaattatgtcaatggtcc 324
Query: 125 ctcatttactatttagcactgatcaatctataaggattcctacctagcaactttattatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcatttactatttagcactgatcaatctataaggattcctacctagcaactttattatc 384
Query: 185 tgttcatcagttggtggacatgtaggctgtttccaaatctgactattataaatagagcaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttcatcagttggtggacatgtaggctgtttccaaatctgactattataaatagagcaa 444
Query: 245 caatgaacatggatgcaccattctctctgtattataacactaaatcctttgtgtacatgc 304
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 445 caatgaacatggatgcaccattctctctgtagtagaacactaaatcctttgtgtacatgc 504
Query: 305 ctaagaatagtatatgagatgtaggtttattaatattcagcttcctggggaatcagcatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctaagaatagtatatgagatgtaggtttattaatattcagcttcctggggaatcagcatt 564
Query: 365 ttgatccacatgatgtctttgcaagttcatacttccacaagcaatgaacaagcaattttg 424
||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgatttagatgatgtctctgcaagttcatacttccacaagcaatgaacaagcaattttg 624
Query: 425 tttacccactgtaaatgtaacttttattcaccagatgtaactgttgttccaaaggtttgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttacccactgtaaatgtaacttttattcaccagatgtaactgttgttccaaaggtttgc 684
Query: 485 agctgaatagcttgcccccttctagttctttctgaactcta 525
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agctgaatagcttgcccccttctagttctttctgaactcta 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_k15.g1 MSMg01no059_k15.g1 CHROMAT_FILE:
MSMg01no059_k15.g1 PHD_FILE: MSMg01no059_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:13 2005
(597 letters)
>mm_chr5_70169836_70170836
Length = 1001
Score = 1065 bits (551), Expect = 0.0
Identities = 587/601 (97%), Gaps = 4/601 (0%)
Strand = Plus / Minus
Query: 1 attatgtcccgatctctcaagtcctgagcatgactatcaaatccttt----atccagata 56
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 801 attatgtcccgatctctcaagtcctgagcatgactatcaaatcctttatccatccagata 742
Query: 57 aactttatggaaatgaaatagtctttaacatgaaagcatttctcccaatcatcttgatca 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aactttatggaaatgaaatagtctttaacatgaaagcatttctcccaatcatcttgatca 682
Query: 117 ttatatttttttttctgtcattactacttgatgctcagtgaagaatgaaaacatctagat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatatttttttttctgtcattactacttgatgctcagtgaagaatgaaaacatctagat 622
Query: 177 acgttctctcaaggtgatatttatctagccctgacttctcattgattcctgataaaacac 236
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgttctctcaaggtgatatttatctagccctgacttctcattgattcctgataaaacac 562
Query: 237 acaattacacatataattttcttcttgcaggaataatgctagctattcctcctgttgcta 296
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaattacacatataatattcttcttgcaggaataatgctagctattcctcctgttgcta 502
Query: 297 ataatggaacatacaaacaagtaagtaatgtataaattgaataacacgactaattctcca 356
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ataatggaacatacaaacaagtaagtaatgtataaattgaataacatgactaattctcca 442
Query: 357 tggctatatcttcctcacataattacattgtttatttgaattgtagtgaaatttttccag 416
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tagctatatcttcctcacataattgcattgtttatttgaattgtagtgaaatttttccaa 382
Query: 417 tttcaaatacctttgggctatactcaatatatctgtagaaacttgaattctaaaaattct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaaatacctttgggctatactcaatatatctgtagaaacttgaattctaaaaattct 322
Query: 477 tccacttatgaaaaataagcacactattaatattcttggatcccaaggcttgtaaccatt 536
|||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccacttaggaaaaacaagcaaactattaatattcttggatcccaaggcttgtaaccatt 262
Query: 537 atggcaagtaatttataattaactataaaatccatagaatttaaccataactacttgtca 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 atggcaagtaatttataattaactataaaatccatagaatttaaccataactacttttca 202
Query: 597 g 597
|
Sbjct: 201 g 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 1001
Length adjustment: 10
Effective length of query: 587
Effective length of database: 991
Effective search space: 581717
Effective search space used: 581717
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
