Query= MSMg01no059_l05.b1 MSMg01no059_l05.b1 CHROMAT_FILE:
MSMg01no059_l05.b1 PHD_FILE: MSMg01no059_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:16 2005
(503 letters)
>mm_chr5_142090370_142091272
Length = 903
Score = 934 bits (483), Expect = 0.0
Identities = 498/503 (99%)
Strand = Plus / Minus
Query: 1 tgaatctgcaagtgaaaaaagaagccatgaaattatgagttatttcaatgtagaaatcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgaatctgcaagtgaaaaaagaagccatgaaattatgagttatttcaatgtagaaatcaa 644
Query: 61 gagttatttcaacggacgccctgttgtactttgaatgaaggttgtctcacgagtatagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gagttatttcaacggacgccctgttgtactttgaatgaaggttgtctcacgagtatagcc 584
Query: 121 ggctcacatggttgatgtgtgagccaacatggatttatttgctaccaagccaatgaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggctcacatggttgatgtgtgagccaacatggatttatttgctaccaagccaatgaaaat 524
Query: 181 gatcctgataccatgacctcccagcccctggtattatgagctctgtgcctgagaagaagc 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 523 gatcctgataccatgacctcccagcccctggtattatgagctccgtgcctgagaagaagc 464
Query: 241 ctaatgcatcctactttccaaatcacagtgctctcagtaccccagcagtcctcccacctt 300
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 463 ttaatgcagcctactttccaaatcacactgctctcagtaccccagcagtcctcccacctt 404
Query: 301 ctcctgccttcctgtgctcctcccgtgctccacactggtcctcccagaacatttatatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctcctgccttcctgtgctcctcccgtgctccacactggtcctcccagaacatttatatca 344
Query: 361 cactgtatctcagctgctttctgctcagcagaatggtctcccacagcgatgagatatcga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cactgtatctcagctgctttctgctcagcagaatggtctcccacagcgatgagatatcga 284
Query: 421 tccttcctctttgtttcacccagtcccaagagatgtctgttatgattggaatcaatatga 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcattcctctttgtttcacccagtcccaagagatgtctgttatgattggaatcaatatga 224
Query: 481 aggtgaatatccaagaaacttca 503
|||||||||||||||||||||||
Sbjct: 223 aggtgaatatccaagaaacttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_l05.g1 MSMg01no059_l05.g1 CHROMAT_FILE:
MSMg01no059_l05.g1 PHD_FILE: MSMg01no059_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:16 2005
(428 letters)
>mm_chr5_141965262_141966089
Length = 828
Score = 712 bits (368), Expect = 0.0
Identities = 411/432 (95%), Gaps = 15/432 (3%)
Strand = Plus / Plus
Query: 1 ttcttac-tgtgtacacacactgcctgtaaatgaatgggagtctggagagatgacttagc 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcttacatgtgtacacacactgcctgtaaatgaatgggagtctggagagatgacttagc 267
Query: 60 agttcagagcaaatactgctcttccaaaggacctgtgttcagaagctcctggaactcagg 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 268 agttcagagcaaatactgctcttccaaagggcctgtgttcagaagctcctggaactcagg 327
Query: 120 ctccaggacattagatgtttctggcctctgtggtg--cacacacacacacacacacacac 177
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 328 ctccaggacattagatgtttctggcctctgaggtatacacacacacacacacacacacac 387
Query: 178 acacacacacacacacacacagagagagagagagagagagagagagagagagagagagag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acacacacacacacacacacagagagagagagagagagagagagagagagagagagagag 447
Query: 238 agaga-gagagagttattattaataaagtcaaagacaattctgtggctttgacgggggaa 296
||| | || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agacatga-aga----------ataaagtcaaagacaattctgtggctttgacgggggaa 496
Query: 297 ctctatttccttacactgagaggaggatactgagagtagcagatatgagggtgcttgctg 356
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctttatttccttacactaagaggaggatactgagagtagcagatatgagggtgcttgctg 556
Query: 357 ggaatgtatgtagctttcatcttgtctctttgggacatctctaggagataggagaggcat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggaatgtatgtagctttcatcttgtctctttgggacatctctaggagataggagaggcat 616
Query: 417 ttgtgtgtatgc 428
||||||||||||
Sbjct: 617 ttgtgtgtatgc 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
