XXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAATCCGCGGAATTCTTTGA
TTATCCATATATTTTGTCCCACCATCCCAGATTTGTTAACAAAGAACAGT
ATTCCTCCTCCAACATAATGCAAGCCCCTCTCTATTTGGCAGTCATCAAG
TATAGAACTCTAGTTTTAGAGAGCAACCCCTGAAAGGGAGTTTATCTCTT
GGTGAAGCGACTGAAGGCTCTTCATAATGGTCAAGGCTGTCCTGAAAGTC
AGATGGTGGATTTTGAAGAGATCTGCTCCAGCAGCTCCTGTGGTGCCCAA
TGAGACTGTGAGACCCAGTCCAAAGAGCAGGGGGATCTTATTTTATTTGG
TCTCCTCTTACATGCAAGGCTAGTTCTTCAGGCACATGGAGAGAAATCTG
AGCCCCCAACCATTATGGGGTCACAGAAGTCTTAGAAAATTTTTAATAAG
CCTCAAAATCTTACTAAGATCATAGACAGTTGAACTTTTCTAGGGGAGTG
ATATTCACACTTTTTTGTAGGCTGTGATTGCTGTCAAGTCAACCATGCTC
CAATTAAATGTTCCACCCTCAGATGTATGACAGCACAAATTGGGATTGGT
AGGTTATCCACTAAATTTTAGAGAACGACATAAAGCTGCTGCGATAAGGT
AAGGAACTCAGATATGATGGAATTAAAGAAGAGAGGAGGTTGACTATTAT
CAGAATATATTATATGAAATTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAATATGAGACATTGACTTAT
CTCTGTTTATAGTATTTTCTTTCAATATTAAGTTGTTTGGTTTAAACTTA
GAATACGTTTTACTGTAGCTAATATTGATCATACCTAGATATGTGGTTAA
TTTGTTGTAACTTCTAAATTGATTATTGAATTCATCTTTCATGTATTGAT
TACAGGGATGAATTCTGTCATTAATCTTCACTTAGTAAATTTTGTTAACT
TCAATTCTTTTCTTTTTGCTCATATCTGATTCTGATAAGGTATGAAAGCT
GTGTTTAGAATTATATTTGGGTTAAGGGAATATTGTAGCTAGAAAAGATT
TACTATCTGGGCAGCCCCGCCACACTCCTTTAGTCCCAGCTCTTGGGAGG
CAGAGGCAGGCAGATTTCTGAGTTTAAGGCCAGCCTGACGACAGAGTGAG
TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGTAAACAGAAA
AGAATTACTATTTTTTATAACTTAAACAAATGTTAATAATTCAATAAATG
AGTTACAAGCATGCATATATTTCCTACAACCCAAACAATTATACCTTCCT
TCAAGTAGAAAATAGGCAATTATTACTTCTTATCAGTTTAAGCTCACTGG
AGGAGCAGGAAAAATGTTCTTTTTCTTTATN

Query= MSMg01no060_b17.b1 MSMg01no060_b17.b1 CHROMAT_FILE:
MSMg01no060_b17.b1 PHD_FILE: MSMg01no060_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:46 2005
         (654 letters)



>mm_chr5_57062605_57063658
          Length = 1054

 Score =  714 bits (369), Expect = 0.0
 Identities = 387/393 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctttgattatccatatattttgtcccaccatcccagatttgttaacaaagaaca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggaattctttgattattcatatattttgtcccaccatcccagatttgttaacaaagaaca 334

                                                                       
Query: 65  gtattcctcctccaacataatgcaagcccctctctatttggcagtcatcaagtatagaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtattcctcctccaacataatgcaagcccctctctatttggcagtcatcaagtatagaac 274

                                                                       
Query: 125 tctagttttagagagcaacccctgaaagggagtttatctcttggtgaagcgactgaaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tctagttttagagagcaacccctgaaagggagtttatctcttggtgaagcgactgaaggc 214

                                                                       
Query: 185 tcttcataatggtcaaggctgtcctgaaagtcagatggtggattttgaagagatctgctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tcttcataatggtcaaggctgtcctgaaagtcagatggtggattttgaagagatctgctc 154

                                                                       
Query: 245 cagcagctcctgtggtgcccaatgagactgtgagacccagtccaaagagcagggggatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cagcagctcctgtggtgcccaatgagactgtgagacccagtccaaagagcagggggatct 94

                                                                       
Query: 305 tattttatttggtctcctcttacatgcaaggctagttcttcaggcacatggagagaaatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  tattttatttggtctcctcttacatgcaaggctagttcttcaggcacatggagagaaatc 34

                                            
Query: 365 tgagcccccaaccattatggggtcacagaagtc 397
           |||| |   || |||||||||||||||||||||
Sbjct: 33  tgagtcaaaaatcattatggggtcacagaagtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no060_b17.g1 MSMg01no060_b17.g1 CHROMAT_FILE:
MSMg01no060_b17.g1 PHD_FILE: MSMg01no060_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:46 2005
         (337 letters)



>mm_chr5_56906387_56907123
          Length = 737

 Score =  636 bits (329), Expect = 0.0
 Identities = 335/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaatatgagacattgacttatctctgtttatagtattttctttcaatattaagttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttaatatgagacattgacttatctctgtttatagtattttctttcaatattaagttgt 260

                                                                       
Query: 61  ttggtttaaacttagaatacgttttactgtagctaatattgatcatacctagatatgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtttaaacttagaatacgttttactgtagctaatattgatcatacctagatatgtgg 320

                                                                       
Query: 121 ttaatttgttgtaacttctaaattgattattgaattcatctttcatgtattgattacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaatttgttgtaacttctaaattgattattgaattcatctttcatgtattgattacagg 380

                                                                       
Query: 181 gatgaattctgtcattaatcttcacttagtaaattttgttaacttcaattcttttctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgaattctgtcattaatcttcacttagtaaattttgttaacttcaattcttttctttt 440

                                                                       
Query: 241 tgctcatatctgattctgataaggtatgaaagctgtgtttagaattatatttgggttaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctcatatctgattctgataaggtatgaaagctgtgtttagaattatatttgggttaag 500

                                                
Query: 301 ggaatattgtagctagaaaagatttactatctgggca 337
           || ||||||||||||||||| ||||||||||||||||
Sbjct: 501 gggatattgtagctagaaaatatttactatctgggca 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)