BAC Information

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BAC

Clone NameMSMg01-060G10
Chromosome5 (Build37)
Map Location 26,839,473 - 26,929,170
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneDpp6, B930011P16Rik, Speer4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060G10.T7 (MSMg01no060_g10.b1)MSMg01-060G10.TJ (MSMg01no060_g10.g1)
ACCAG286853AG286854
length723719
length of high quality
(start - end)
274 (67 - 340)610 (74 - 683)
definitionCHROMAT_FILE: MSMg01no060_g10.b1 PHD_FILE: MSMg01no060_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:07 2005CHROMAT_FILE: MSMg01no060_g10.g1 PHD_FILE: MSMg01no060_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,839,473 - 26,839,746)(26,928,578 - 26,929,170)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CGGTCTTGCCCAGATAATGGAGGAGCAGAGAAAGCCAGGCTGTCCTCTGG
GAACCCTTAGTCTATCCCCTGGGTAGTACTGCTGACTCACAGCAGCCCTA
GGCTGGCACTGAGAAGTAGACTTAATTTCTAAGGACTAACCTGTGAGGAA
AGAAGGTGGCCCCTTTGTCTCTCCACTCTGCCATCCAGTTACAACTCAAG
CCAGCTGGTCTTGAACATCAGAGGGACAGCATCATTCTGGAGCTTATTAA
GACCCACACCCCTGGGACTCACACTGCTGGTTATGTGAGAGTCAAGATGG
GCTTGTTAGTAGACACTGTGCTTCTATCAGCCCCTAGGATTCAGACGACG
TTGCATGTGCCTAACTCAACCAATTTGCACATACTAATTGCCTACCGTTG
ACTTCCGCTCTCCTGCTTTTCTTTCTGACGCTTATGTATATCTAACCGAG
CTTGTGGCCGAGTGACTTCACGAGCCGCATGAAGCTATCCAGGCCGCTCT
TACCAATTTCTTCCGTTCAAACTTGACAGCGTGTCCCTTCTTCCGCTCTC
CCCCTCTGTGTTCTACCCTCCCTACTCTGTACATCACCCCCTCCTGATCT
CTTGCCCCCTGGTTCACCCCCCTGCCCCTACTCTCCTCTGGTATCCCCCG
CACATTCTCTTCATTCCTTCCTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAGCATCCTGCTAGCTTTCACTAAAT
CAAAAGTTGATAATGTTGCCAGGAAGCACCTGAAGCTTATAGCAGTTTTC
CCTGCTTTGCTGTAACCTACCTACATACCTTGTTTGATGGCAACTCTCTG
TTATGTGACTGGAAAGGTCCATGTAACCATTTAGACAGCAGAATACTCAG
GACAACCGCATCCATGTCACTGGGTCAGAGACACTCATATGTGCTTCTTG
TTTCTTGTGTTGTGAGGGTTTTGCAACAACATCATGAGTGAGTCCTGTAA
GTGGGCATGGGATGTACTTCCCTGCCTGTCTCCTGTCTTCTGTCTCTTGT
CAGTTCATTTCAGCAAACTTAGATGCAACTTTCTTATGGCTTTCCCGAGA
TGAATGAAAAAATCCTATTGGGGGAGCACTCAGCACTCACAACAAACAAA
ACAGGAGCTTGCTGAGTATTTCAATTTAAGTTTTGGCTCAGAACAACCCT
GTGTACACTGTCCCACATCTGTCTCTACTGATGCTCTTTAGTTACTTCTC
TTAACCTGTAAAAAGACCTCACATGCCCAGTCAAGTCTGTTTGTAGCCTT
GAAATGTATGCATAAATGTTTATATTACTTTTAGAGCTGCATAGTATCCG
GATAAAGCTAGCTAGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_g10.b1 MSMg01no060_g10.b1 CHROMAT_FILE:
MSMg01no060_g10.b1 PHD_FILE: MSMg01no060_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:07 2005
         (274 letters)



>mm_chr5_26839273_26839946
          Length = 674

 Score =  514 bits (266), Expect = e-150
 Identities = 272/274 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaggagcagagaaagccaggctgtcctctgggaacccttagtctatcccctgggtag 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 atggaggagcagagaaagccaggctgtcctctgggaacccttaggctatcccctgggtag 260

                                                                       
Query: 61  tactgctgactcacagcagccctaggctggcactgagaagtagacttaatttctaaggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactgctgactcacagcagccctaggctggcactgagaagtagacttaatttctaaggac 320

                                                                       
Query: 121 taacctgtgaggaaagaaggtggcccctttgtctctccactctgccatccagttacaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacctgtgaggaaagaaggtggcccctttgtctctccactctgccatccagttacaact 380

                                                                       
Query: 181 caagccagctggtcttgaacatcagagggacagcatcattctggagcttattaagaccca 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagccagctgatcttgaacatcagagggacagcatcattctggagcttattaagaccca 440

                                             
Query: 241 cacccctgggactcacactgctggttatgtgaga 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 cacccctgggactcacactgctggttatgtgaga 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no060_g10.g1 MSMg01no060_g10.g1 CHROMAT_FILE:
MSMg01no060_g10.g1 PHD_FILE: MSMg01no060_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:07 2005
         (610 letters)



>mm_chr5_26928578_26929587
          Length = 1010

 Score = 1123 bits (581), Expect = 0.0
 Identities = 590/593 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagcatcctgctagctttcactaaatcaaaagttgataatgttgccaggaagcacctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ttagcatcctgctagctttcactaaatcaaaagttgataatgttgccaggaagcacctga 534

                                                                       
Query: 61  agcttatagcagttttccctgctttgctgtaacctacctacataccttgtttgatggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agcttatagcagttttccctgctttgctgtaacctacctacataccttgtttgatggcaa 474

                                                                       
Query: 121 ctctctgttatgtgactggaaaggtccatgtaaccatttagacagcagaatactcaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctctctgttatgtgactggaaaggtccatgtaaccatttagacagcagaatactcaggac 414

                                                                       
Query: 181 aaccgcatccatgtcactgggtcagagacactcatatgtgcttcttgtttcttgtgttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aaccgcatccatgtcactgggtcagagacactcatatgtgcttcttgtttcttgtgttgt 354

                                                                       
Query: 241 gagggttttgcaacaacatcatgagtgagtcctgtaagtgggcatgggatgtacttccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gagggttttgcaacaacatcatgagtgagtcctgtaagtgggcatgggatgtacttccct 294

                                                                       
Query: 301 gcctgtctcctgtcttctgtctcttgtcagttcatttcagcaaacttagatgcaactttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gcctgtctcctgtcttctgtctcttgtcagttcatttcagcaaacttagatgcaactttc 234

                                                                       
Query: 361 ttatggctttcccgagatgaatgaaaaaatcctattgggggagcactcagcactcacaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 233 ttatggctttcccgagatgaatgaaaaaatcctattgggggagcactcagcactcacaaa 174

                                                                       
Query: 421 aaacaaaacaggagcttgctgagtatttcaatttaagttttggctcagaacaaccctgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aaacaaaacaggagcttgctgagtatttcaatttaagttttggctcagaacaaccctgtg 114

                                                                       
Query: 481 tacactgtcccacatctgtctctactgatgctctttagttacttctcttaacctgtaaaa 540
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 113 tacactgtcccacatctgtctctactgatgctctttagtaacttttcttaacctgtaaaa 54

                                                                
Query: 541 agacctcacatgcccagtcaagtctgtttgtagccttgaaatgtatgcataaa 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  agacctcacatgcccagtcaagtctgtttgtagccttgaaatgtatgcataaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)