TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCGTTGTATTCATTGATTTTTAGAATGTACCAATGCAATCCCAATA
CAAAACTGATGTACGCTTAAAGGTTTAATCGCATTTTATTTTGGTAATGT
AACCAAGACTTTTAAAATGAAAGTATGAAACTGGATAAAACCATGATCAT
TTTCAATTTCTGATGTACCCCTATTTAAATAGTAGTTCTAACGATTTGCA
TTATATGATACTAACATATACCACTAGCTTCAATTACAATGTGTGTATAT
GAATGTATATATTTATATGTGCATCTGTGTTTATTTTTACATGTACATAC
ATATATATGCACAATACTAAGCTATTGCTTATCTATATTTATACCCACCT
TTAGAAGTGGTTTTAGCCAATTTAGTCTTTAATACTGTGCTTTAGAGTAG
AGCCTAACACCACGTGAGCTTCCCATTTCTGGGACCAACATAGTGTTGTT
CCTGTCTAATTCTACAAAACATTTATATGCTAGGATTGCGTACCCGTGGG
AGCCAACTTTGAATGATGAGAGACGTGAACCCATCTCTTCATCCTAGCTT
GACTTTTCAAAGACACGGTGGTAGTGGCTCAAAGTCATTCCTGGAAAGGT
CTAGTGAGTAAGACTTGGCAACTTCAGAGACACAGTCAGCTCCCCAGTGC
TCT

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGTGTAACAGCCATCTGAGAGGC
TTCACCCAGTAGCTGCTATGAACCCACAGTCAAACATTAGGAGTTCAGGA
AATCTTGAGTGTTGTGGGGATTGAAAGAACCAGAGACTGAACCACCTACC
AGAGAACACTAATGGGATGGACCTAAGCCCTCTGCACATATGTAATATAT
CTTCAGCTTGGTCCTCTTGTGGGACATCTATCGGCAGGCTTAAGGGCTGA
ACTCTGACTCTATTGCCTACTTTTGGATCCCCTTTTCCTAACTGGACAGC
CTTGTCTAGCCTCAATAGAAGAAGATGCACCTAGCCCTACTACAACTTGA
TATGCAAAGACAGGCCAATATCCATGGTAGTTCTCCCCTTTAATGAGGAG
AAAGGTAGGCAGCATAGGAGGAGAGGAGGAGAGGAAGGAGGAAGGNAGAT
GCCTCTCTTTTTTCTTCTTCTCGTTTCCTCTTTATTTTTCTCCTCTTCTT
TTCTTTTCTTTTTTCTTTATACTTTCTGCTTTCATTATATTGTTCCACGT
TTCCACTCGTCTTTCTTTCTCTCTTTCCCCGTTTTTTGTTATTCACTTAC
TTTTTACTTTCTATTTGCTCTCTCTTTTTTCTTTTTGCCCTCCCTCTCGC
ACCTTCTTTTTTATTCTTTTTTATTATAATC

Query= MSMg01no060_g17.b1 MSMg01no060_g17.b1 CHROMAT_FILE:
MSMg01no060_g17.b1 PHD_FILE: MSMg01no060_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:09 2005
         (623 letters)



>mm_chr5_7005101_7006123
          Length = 1023

 Score =  942 bits (487), Expect = 0.0
 Identities = 505/511 (98%)
 Strand = Plus / Minus

                                                                        
Query: 113  cttttaaaatgaaagtatgaaactggataaaaccatgatcattttcaatttctgatgtac 172
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1023 cttttaaaatgaaagtatgaaactggataagaccatgatcattttcaatttctgatgtac 964

                                                                        
Query: 173  ccctatttaaatagtagttctaacgatttgcattatatgatactaacatataccactagc 232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  ccctatttaaatagtagttctaacgatttgcattatatgatactaacatataccactagc 904

                                                                        
Query: 233  ttcaattacaatgtgtgtatatgaatgtatatatttatatgtgcatctgtgtttattttt 292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903  ttcaattacaatgtgtgtatatgaatgtatatatttatatgtgcatctgtgtttattttt 844

                                                                        
Query: 293  acatgtacatacatatatatgcacaatactaagctattgcttatctatatttatacccac 352
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  acatgcacatacatatatatgcacaatactaagctattgcttatctatatttatacccac 784

                                                                        
Query: 353  ctttagaagtggttttagccaatttagtctttaatactgtgctttagagtagagcctaac 412
            ||| |||| |||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  cttaagaactggttttagttaatttagtctttaatactgtgctttagagtagagcctaac 724

                                                                        
Query: 413  accacgtgagcttcccatttctgggaccaacatagtgttgttcctgtctaattctacaaa 472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  accacgtgagcttcccatttctgggaccaacatagtgttgttcctgtctaattctacaaa 664

                                                                        
Query: 473  acatttatatgctaggattgcgtacccgtgggagccaactttgaatgatgagagacgtga 532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  acatttatatgctaggattgcgtacccgtgggagccaactttgaatgatgagagacgtga 604

                                                                        
Query: 533  acccatctcttcatcctagcttgacttttcaaagacacggtggtagtggctcaaagtcat 592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603  acccatctcttcatcctagcttgacttttcaaagacacggtggtagtggctcaaagtcat 544

                                           
Query: 593  tcctggaaaggtctagtgagtaagacttggc 623
            |||||||||||||||||||||||||||||||
Sbjct: 543  tcctggaaaggtctagtgagtaagacttggc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)