BAC Information

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BAC

Clone NameMSMg01-060J05
Chromosome5 (Build37)
Map Location 101,334,641 - 101,335,296
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
Downstream geneLOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1, Wdfy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060J05.T7 (MSMg01no060_j05.b1)MSMg01-060J05.TJ (MSMg01no060_j05.g1)
ACCAG286987AG286988
length711716
length of high quality
(start - end)
671 (39 - 709)48 (254 - 301)
definitionCHROMAT_FILE: MSMg01no060_j05.b1 PHD_FILE: MSMg01no060_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:20 2005CHROMAT_FILE: MSMg01no060_j05.g1 PHD_FILE: MSMg01no060_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TCCTAGTCACTCCCATTCTCGGGGCGTAATAGTGGGGTGATGGGCAAGCA
ACGAATCAGGAGCTGTCACACCATATCAGGTGCTGAAACGTCACGCTGCG
GGCTATATAAGCAGCGCCATTTTCCTGGTTCGGAGTCTTCCTGAAGAAGT
AAGCAATAAAGCTTTTGCCGCGGAAGATTCCGGTTTGTTGCGTCTTTCTT
GCCGGTCGAGTGGGACGCAATACCATAGCCTTCCTATCACCCGTGTGGAG
GTCCATCTTGCTCTGCCAACTTGTGGCTTCGGGATTGTGTTTAGCACGAT
TCTCTTCAAGGAAGGAGGAGGATAGGAGAAAAGCTAGAACTCTTGCTATT
CTTTTTCTTATTTGGAGGCTACCTTGCATGTCTTTTTTCCGACCTTTATT
TTCTGTTGTCTGTTTCTTTAGGTTACACATGGATGGGTGGCCATCTTGAA
GTTAAGACTTATTACCTTCTGTGGTCCTAGACATCCAACTCATGGCCTCA
TGCATGCAAGGCAGGCTCTGTGCCTTTGAGTTTTGCTTCCAGACTTGAAG
CTATTGTCTCTGTTCATGATCCGGCCAGCTTTGTGGAAAATTGTTAAAGT
CACGCTTGCAGGTTTCATTTTGGAAATGCTTTTGAGACACACTGTCCCAT
CTTATTTCGGT
NCCGATGCTACGGGAGCCCGGGAGGCGNCGGGTCNNCACCCGCAGGNGAA
NNANAGATTTCCGGCGACGGGGCNNGNNNANNCNNAAGACNNNAGAACGG
AANCNNGAAGGCCACCCCCCCGGNGCCNNNNANNGNCCAAGGGGCCNNGA
GAAACANCGCAAAAGGAAGAAAAAAANAAAAACGAACCCANNCCGAAGAG
CCCGCNAAGCCAAAGGAACAAAACCAAAAAAAGCGCAANCAAACGGGTAT
TTTTTTGGCCTGAAGAATCATGAGGCAAAATAAGGAAGCCTGTTTGCCAG
GGAGAGAGATGTTTTTTTTTTTTGGGAGNCCNGCNNCNGAAAGCANCCGC
CNCAGATCCAGCACCCCCCAAGAAACGCCCCGGGNCCGACANACANAAAN
CGCGGGACAAACCAAGACGGCAACGGACACCGCGCGCCAACCGGCACANA
ACCACAAGCGGAGAACACNAANCACGCCGCAGAAAANCGCACAAAGGCGC
ACAAGAACAGGCNCCGGAACCNNNGAACGAGGGCAAAAAAAAAACGGGAC
AACCCACAGAGCNGGGACCCNCCAAGCACAGAAAACCCAGCGCGCAGAGA
CACGGAAGAAAAGGCAGNCAAGGGCCCGAGCACGGAGCCCCCGAAGGAGG
AGCNAGTTTTATGACTGAATGAGCAGACGGGGTTTGCAACCCATAAGAAA
ACATCAACAAATCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_j05.b1 MSMg01no060_j05.b1 CHROMAT_FILE:
MSMg01no060_j05.b1 PHD_FILE: MSMg01no060_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:20 2005
         (671 letters)



>mm_chr5_101334423_101335496
          Length = 1074

 Score = 1108 bits (573), Expect = 0.0
 Identities = 639/667 (95%), Gaps = 15/667 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcactcctagtcact-cccattctcggggcgtaatagtggggtgatgggcaagcaacgaa 67
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 219 tcactcctagtcactgcccattctcggggcgtaatagtggggtgatgggcgagcaacgaa 278

                                                                       
Query: 68  tcaggagctgtcacaccatatcaggtgctgaaacgtcacgctgcgggctatataagcagc 127
           |||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 279 tcagaagctgtcacgccatatcaggttctgaaacgtcacgctgcaggctatataagcagc 338

                                                                       
Query: 128 gccattttcctggttcggagtcttcctgaagaagtaagcaataaagcttttgccgcggaa 187
           |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct: 339 gccattttcctggttcggggtcttcctga-gaagtaagcaataaagcttttgccgcagaa 397

                                                                       
Query: 188 gattccggtttgttgcgtctttcttgccggtcgagtgggacgcaataccatagccttcct 247
           ||||| |||  ||||| ||||||||||||||||         ||||||||||||||||||
Sbjct: 398 gattctggtg-gttgcatctttcttgccggtcg---------caataccatagccttcct 447

                                                                       
Query: 248 atcacccgtgtggaggtccatcttgctctgccaacttgtggcttcgggattgtgtttagc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atcacccgtgtggaggtccatcttgctctgccaacttgtggcttcgggattgtgtttagc 507

                                                                       
Query: 308 acgattctcttcaaggaaggaggaggataggagaaaagctagaactcttgctatt-cttt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 508 acgattctcttcaaggaaggaggaggataggagaaaagctagaactcttgctatttcttt 567

                                                                       
Query: 367 ttcttatttggaggctaccttgcatgtcttttttccgacctttattttctgttgtct--g 424
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |
Sbjct: 568 ttcttatttggaggctaccttgcatgtcttttctccgacctttattttctgttgtctatg 627

                                                                       
Query: 425 tttctttaggttacacatggatgggtggccatcttgaagttaagacttattaccttctgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tttctttaggttacacatggatgggtggccatcttgaagttaagacttattaccttctgt 687

                                                                       
Query: 485 ggtcctagacatccaactcatggcctcatgcatgcaaggcaggctctgtgcctttgagtt 544
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 688 ggtcctagacatccaactcatggcctcatgcacgcaaggcaggctctgtgcctttgagtt 747

                                                                       
Query: 545 ttgcttccagacttgaagctattgtctctgttcatgatccggccagctttgtggaaaatt 604
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttgcttccaggcttgaagctattgtctctgttcatgatccggccagctttgtggaaaatt 807

                                                                       
Query: 605 gttaaagtcacgcttgcaggtttcattttggaaatgcttttgagacacactgtcccatct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gttaaagtcacgcttgcaggtttcattttggaaatgcttttgagacacactgtcccatct 867

                  
Query: 665 tatttcg 671
           |||||||
Sbjct: 868 tatttcg 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1074
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1064
Effective search space:   703304
Effective search space used:   703304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)