BAC Information

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BAC

Clone NameMSMg01-060K07
Chromosome5 (Build37)
Map Location 101,679,313 - 101,806,806
singlet/doubletdoublet
Overlap geneLOC100040902, Cycs-ps2
Upstream geneLOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888
Downstream geneLOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060K07.T7 (MSMg01no060_k07.b1)MSMg01-060K07.TJ (MSMg01no060_k07.g1)
ACCAG287039AG287040
length709704
length of high quality
(start - end)
610 (45 - 654)568 (72 - 639)
definitionCHROMAT_FILE: MSMg01no060_k07.b1 PHD_FILE: MSMg01no060_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:25 2005CHROMAT_FILE: MSMg01no060_k07.g1 PHD_FILE: MSMg01no060_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,806,197 - 101,806,806)(101,679,313 - 101,679,849)
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATATGTACCGTTACTCTGTTGTACCCAGAAAACCATGATTCATTGA
AGATATTTACTACTTATGGCTTTTAAAGTCTTTCTCTACTTTCTTCCTCC
CCCAAAGATCCCAGACCCTTACGGGGAGTAGCATATGACAGACATTTTGT
TTTATAATTAGGATTTTAACTTGAATATTACTTATTGAGAGATAATATTT
ACAGACTGACAATGAGCACAAAAATGCTCTTCATCTTTATAATGGTTCAC
ACTCTGTTCATGTCTTTGAATTAAACATTTTTAACAGATTATTTTCCCCC
AAAATAAAAATTCCATGAAACTAAGCCTATTTGACACTTGAGTCTAACTT
AGGGATGTTCAACGACCCCAAGTATTTAGAGAAAGCTTTGAGAGGCAGTG
TTAATTATCTGAACAAGGAGAAGATATTTATTAAGGAAAGCATGGAGAAT
GGTGGGAGACCAGTGACATGAAAGTGTGCAATTCTCCATATAATCAGAGC
AGTCCAGGTTAACTGTAGCTTAGACTCACATTCATAGGACACCATGAGCC
TAGCAGTTGTTGTTATTGTTGTTGTTGTTGTAGGTTCTTGGTTCCTAAGT
GGAAGGCTATGACTATCACACTTTCATTTTCTTTCAGGTCGTATTTTGAT
AGCCTCTGT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACACCAGCTCAACTGAACTGTAAAAACA
CGAGATGACGTCTACAGCTGAGGGGACTTATAGCTGAGGAGAAGGTGGAA
CCTCAGGAATGTCATGTGTGTCATTAAATACTGAAAGGAAGTCTTTGTTT
AGCATTGTAAAATTTATATAGATGAGAATAAACTCAAATAAACAAAAATA
AAATATTAGGGTGGGCTTTAGAACATACACACAGACAACACAAAGTCCTC
AGATTTAGTGTGACCACGACATTATTTTTGACTCGGGTCTCTGTTGACCC
TAATATGATGACTCAGTCTGTGTTGACTGTGATGTGATGACTTGTGTCTC
CCCCCATTGTGACAAAGTGACTCAGGTCTCTGTTGATTGTGACATGGTGA
CTCAGATCACTGTTGACCATGAGGGGATGACTTGGGTCTCTACTGATTCT
GATGTGAAACTCAGATCTCTGTTGACTGTGACATGGCAATTCAGGTCTCT
GTTGATTGTGACATGGCAACTTGGGTCTCTGATGATTGGGACATGATAAA
TTGGGTCTCTGTTGATTGTAACATGGTGACTCAGGTCTCTGTTGACCATG
CTGGGATGACTTGTGTCTCTGTTGATTGTGATGTGATGACTCGAGTCTTT
GTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_k07.b1 MSMg01no060_k07.b1 CHROMAT_FILE:
MSMg01no060_k07.b1 PHD_FILE: MSMg01no060_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:25 2005
         (610 letters)



>mm_chr5_101805891_101806901
          Length = 1011

 Score = 1009 bits (522), Expect = 0.0
 Identities = 587/610 (96%), Gaps = 4/610 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatgtaccgttactctgttgtacccagaaaaccatgattcattgaagatattt 64
           |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 916 gaattcatatgtacagttactctgttgtacccagaaaaccatgtttcattgaagatattt 857

                                                                       
Query: 65  actacttatggcttttaaagtctttctctactttcttcctcccccaaagatcccagaccc 124
           ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 856 actacttatggcttttatagtctttctctactttctccctccccgaaagatcccagaccc 797

                                                                       
Query: 125 ttacggggagtagcatatgacagacattttgttttataattaggattttaacttgaatat 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 796 ttatggggagtagcatatgacagacattttgttttataattaggattttaaattgaatat 737

                                                                       
Query: 185 tacttattgagagataatatttacagactgacaatgagcac-aaaaatgctcttcatctt 243
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 736 tacttattgagagataatatttacggactgacaatgagcacaaaaaatgctcttcatctt 677

                                                                       
Query: 244 tataatggttcacactctgttcatgtctttgaattaaacatttttaacagattattttcc 303
           | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 676 tctaatggttcacactctgttcatgtctttgaaataaacatttttaacagattattttcc 617

                                                                       
Query: 304 cccaaaataaaaattccatgaaactaagcctatttgacacttgagtctaacttagggatg 363
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 616 ccccaaataaaaattccatgaaactaagcttatttgacacttgagtctaacttagggatg 557

                                                                       
Query: 364 ttcaacgaccccaagtatttagagaaagctttgagaggcagtgttaattatctgaacaag 423
           ||||| ||  | ||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 556 ttcaatgagtctaagtatttagagaaagctttgagaggcggtgttaattatctgaacacg 497

                                                                       
Query: 424 gagaagatatttattaaggaaagcatggagaatggtgggagaccagtgacatgaaagtgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gagaagatatttattaaggaaagcatggagaatggtgggagaccagtgacatgaaagtgt 437

                                                                       
Query: 484 gcaattctccatataatcagagcagtccaggttaactgtagcttagactcacattcatag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcaattctccatataatcagagcagtccaggttaactgtagcttagactcacattcatag 377

                                                                       
Query: 544 gacaccatgagcctagcagttgttgttattgttgttgttgtt---gtaggttcttggttc 600
           || |||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 376 gaaaccatgagcctagcagttgttgttattgttgttgttgttgtagtaggttcttggttc 317

                     
Query: 601 ctaagtggaa 610
           ||||||||||
Sbjct: 316 ctaagtggaa 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space:   600600
Effective search space used:   600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_k07.g1 MSMg01no060_k07.g1 CHROMAT_FILE:
MSMg01no060_k07.g1 PHD_FILE: MSMg01no060_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:25 2005
         (568 letters)



>mm_chr5_101679113_101680080
          Length = 968

 Score =  801 bits (414), Expect = 0.0
 Identities = 510/554 (92%), Gaps = 23/554 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaccagctcaactgaactgtaaaaacacgagatgacgtctacagctgaggggacttat 60
           |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
Sbjct: 201 cacaccagctcaactgaactgtaaaaacacaagatgacatctacagctgaggggacttgt 260

                                                                       
Query: 61  agctgaggagaaggtggaacctcaggaatgtcatgtgtgtcattaaatactgaaaggaag 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 agctgaggagaaggaggaacctcaggaatgtcatgtgtgtcattaaatactgaaagggag 320

                                                                       
Query: 121 tctttgtttagcattgtaaaatttatatagatgagaataaactcaaataaacaaaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||          ||||||||
Sbjct: 321 tctttgtttagcattgtaaaatttatatagatgagaataaac----------aaaaataa 370

                                                                       
Query: 181 aatattagggtgggctttagaacatacacacagacaacacaaagtcctcagatttagtgt 240
           |||||||||||| | |||| |||| |||||||||||| | ||||||||||||||||||||
Sbjct: 371 aatattagggtgcgttttacaacacacacacagacaataaaaagtcctcagatttagtgt 430

                                                                       
Query: 241 gaccacgacattatttttgactcgggtctctgttgaccctaatatgatgactcagtctgt 300
           | ||| |||||||||| |||||| |||||||||||||||||||  |||||||||||||||
Sbjct: 431 ggccatgacattatttatgactccggtctctgttgaccctaat--gatgactcagtctgt 488

                                                                       
Query: 301 gttgactgtgatgtgatgacttgtgtctcccccc-----attgtgacaaagtgactcagg 355
           |||||||||||||||||||||||||||||          |||||||||||||||||||||
Sbjct: 489 gttgactgtgatgtgatgacttgtgtctc-----tgttgattgtgacaaagtgactcagg 543

                                                                       
Query: 356 tctctgttgattgtgacatggtgactcagatcactgttgaccatgaggggatgacttggg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tctctgttgattgtgacatggtgactcagatcactgttgaccatgaggggatgacttggg 603

                                                                       
Query: 416 tctctactgattctgatgtga-aactcagatctctgttgactgtgacatggcaattcagg 474
           |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct: 604 tctctaatgattctgatgtgataactcagatctctgttgactgtgacatggcgattcaag 663

                                                                       
Query: 475 tctctgttgattgtgacatggcaacttgggtctctgatgattgggacatgataaattggg 534
           ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 664 tctctattgattgtgacatggcaacctgggtctctgatgattgtgacatgataaattggg 723

                         
Query: 535 tctctgttgattgt 548
           ||||||||||||||
Sbjct: 724 tctctgttgattgt 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)