Query= MSMg01no060_k07.b1 MSMg01no060_k07.b1 CHROMAT_FILE:
MSMg01no060_k07.b1 PHD_FILE: MSMg01no060_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:25 2005
(610 letters)
>mm_chr5_101805891_101806901
Length = 1011
Score = 1009 bits (522), Expect = 0.0
Identities = 587/610 (96%), Gaps = 4/610 (0%)
Strand = Plus / Minus
Query: 5 gaattcatatgtaccgttactctgttgtacccagaaaaccatgattcattgaagatattt 64
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 916 gaattcatatgtacagttactctgttgtacccagaaaaccatgtttcattgaagatattt 857
Query: 65 actacttatggcttttaaagtctttctctactttcttcctcccccaaagatcccagaccc 124
||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 856 actacttatggcttttatagtctttctctactttctccctccccgaaagatcccagaccc 797
Query: 125 ttacggggagtagcatatgacagacattttgttttataattaggattttaacttgaatat 184
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 796 ttatggggagtagcatatgacagacattttgttttataattaggattttaaattgaatat 737
Query: 185 tacttattgagagataatatttacagactgacaatgagcac-aaaaatgctcttcatctt 243
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 736 tacttattgagagataatatttacggactgacaatgagcacaaaaaatgctcttcatctt 677
Query: 244 tataatggttcacactctgttcatgtctttgaattaaacatttttaacagattattttcc 303
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 676 tctaatggttcacactctgttcatgtctttgaaataaacatttttaacagattattttcc 617
Query: 304 cccaaaataaaaattccatgaaactaagcctatttgacacttgagtctaacttagggatg 363
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 616 ccccaaataaaaattccatgaaactaagcttatttgacacttgagtctaacttagggatg 557
Query: 364 ttcaacgaccccaagtatttagagaaagctttgagaggcagtgttaattatctgaacaag 423
||||| || | ||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 556 ttcaatgagtctaagtatttagagaaagctttgagaggcggtgttaattatctgaacacg 497
Query: 424 gagaagatatttattaaggaaagcatggagaatggtgggagaccagtgacatgaaagtgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gagaagatatttattaaggaaagcatggagaatggtgggagaccagtgacatgaaagtgt 437
Query: 484 gcaattctccatataatcagagcagtccaggttaactgtagcttagactcacattcatag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcaattctccatataatcagagcagtccaggttaactgtagcttagactcacattcatag 377
Query: 544 gacaccatgagcctagcagttgttgttattgttgttgttgtt---gtaggttcttggttc 600
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 376 gaaaccatgagcctagcagttgttgttattgttgttgttgttgtagtaggttcttggttc 317
Query: 601 ctaagtggaa 610
||||||||||
Sbjct: 316 ctaagtggaa 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space: 600600
Effective search space used: 600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_k07.g1 MSMg01no060_k07.g1 CHROMAT_FILE:
MSMg01no060_k07.g1 PHD_FILE: MSMg01no060_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:25 2005
(568 letters)
>mm_chr5_101679113_101680080
Length = 968
Score = 801 bits (414), Expect = 0.0
Identities = 510/554 (92%), Gaps = 23/554 (4%)
Strand = Plus / Plus
Query: 1 cacaccagctcaactgaactgtaaaaacacgagatgacgtctacagctgaggggacttat 60
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
Sbjct: 201 cacaccagctcaactgaactgtaaaaacacaagatgacatctacagctgaggggacttgt 260
Query: 61 agctgaggagaaggtggaacctcaggaatgtcatgtgtgtcattaaatactgaaaggaag 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 agctgaggagaaggaggaacctcaggaatgtcatgtgtgtcattaaatactgaaagggag 320
Query: 121 tctttgtttagcattgtaaaatttatatagatgagaataaactcaaataaacaaaaataa 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tctttgtttagcattgtaaaatttatatagatgagaataaac----------aaaaataa 370
Query: 181 aatattagggtgggctttagaacatacacacagacaacacaaagtcctcagatttagtgt 240
|||||||||||| | |||| |||| |||||||||||| | ||||||||||||||||||||
Sbjct: 371 aatattagggtgcgttttacaacacacacacagacaataaaaagtcctcagatttagtgt 430
Query: 241 gaccacgacattatttttgactcgggtctctgttgaccctaatatgatgactcagtctgt 300
| ||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 431 ggccatgacattatttatgactccggtctctgttgaccctaat--gatgactcagtctgt 488
Query: 301 gttgactgtgatgtgatgacttgtgtctcccccc-----attgtgacaaagtgactcagg 355
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 489 gttgactgtgatgtgatgacttgtgtctc-----tgttgattgtgacaaagtgactcagg 543
Query: 356 tctctgttgattgtgacatggtgactcagatcactgttgaccatgaggggatgacttggg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tctctgttgattgtgacatggtgactcagatcactgttgaccatgaggggatgacttggg 603
Query: 416 tctctactgattctgatgtga-aactcagatctctgttgactgtgacatggcaattcagg 474
|||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct: 604 tctctaatgattctgatgtgataactcagatctctgttgactgtgacatggcgattcaag 663
Query: 475 tctctgttgattgtgacatggcaacttgggtctctgatgattgggacatgataaattggg 534
||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 664 tctctattgattgtgacatggcaacctgggtctctgatgattgtgacatgataaattggg 723
Query: 535 tctctgttgattgt 548
||||||||||||||
Sbjct: 724 tctctgttgattgt 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|