Query= MSMg01no060_o23.b1 MSMg01no060_o23.b1 CHROMAT_FILE:
MSMg01no060_o23.b1 PHD_FILE: MSMg01no060_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:47 2005
(668 letters)
>mm_chr5_30948248_30949315
Length = 1068
Score = 1160 bits (600), Expect = 0.0
Identities = 648/672 (96%), Gaps = 14/672 (2%)
Strand = Plus / Plus
Query: 4 gaattcactttcttacgcggctctagagacaaagactgctctgctggtgacatcatgtcg 63
||||||||||||| | | | ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 gaattcactttctaatgtgactctagagacaaagactgctctgctagtgacatcatgtcg 263
Query: 64 ggctagtgacaccaatgtcattagtaatgtttatgtcaggcaagtatccttggcctgaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggctagtgacaccaatgtcattagtaatgtttatgtcaggcaagtatccttggcctgaac 323
Query: 124 ctatgggaaaatagcccagagtcctactgtagtcgataagaactatctcccatgggggat 183
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 324 ctatgggaaaatagcccagagtcctactgtagtcgataagaactgtctcccatggggaat 383
Query: 184 gggggtggggaggcctggcagatggtgtccctttaggacacagttgtgtttcatctagtc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggggtggggaggcctggcagatggtgtccctttaggacacagttgtgtttcatctagtc 443
Query: 244 tccaatgtctcaggaaacagttttggataaattactacttcctttgaaatgacacaaaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tccaatgtctcaggaaacagttttggataaattactacttcctttgaaatgacacaaaac 503
Query: 304 taaaagcactgtgggggacacatagctcagaagtcacctcttggatcttttatccctggt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taaaagcactgtgggggacacatagctcagaagtcacctcttggatcttttatccctggt 563
Query: 364 ttcacccccccc-------agcacactctcgtgaagaaaaattctggaatgttctgcagg 416
||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 564 ttcac-------tgaaaagagcacactctcgtgaagaaaaattctggaatgttctgtagg 616
Query: 417 tccaagagctatccaacacatgacccttcttacatgaaagatgtttccctgtctgtacga 476
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tccaagagctatccaacacataacccttcttacatgaaagatgtttccctgtctgtacga 676
Query: 477 tagcctcctatatttttgttcaagaccctacttataatacattctctacctcatctccca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tagcctcctatatttttgttcaagaccctacttataatacattctctacctcatctccca 736
Query: 537 aaacagatgttacagtcccttgagtgtatactatacatgtttacaagttcaaggcaacca 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaacagatgttacagtcccttgagtgtatactatacatgtttacaagttcaaggcaacca 796
Query: 597 ggaagaagtggtcaaaacaccctttttttcatacctgcagtaataggatcttcagaaaca 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggaagaagtggtcaaaacaccctttttttcatacctgcagtaataggatcttcagaaaca 856
Query: 657 gagggactatgt 668
||||||||||||
Sbjct: 857 gagggactatgt 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_o23.g1 MSMg01no060_o23.g1 CHROMAT_FILE:
MSMg01no060_o23.g1 PHD_FILE: MSMg01no060_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:47 2005
(331 letters)
>mm_chr5_31104369_31105097
Length = 729
Score = 594 bits (307), Expect = e-174
Identities = 325/333 (97%), Gaps = 6/333 (1%)
Strand = Plus / Minus
Query: 1 aacacggaggcactggttagaagatgtcaccaaagcacacagagctgttgggaacttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aacacggaggcactggttagaagatgtcaccaaagcacacagagctgttgggaacttttc 470
Query: 61 agttgggtgagcttggatttccggggagttgcccccagagggccttggagagcttgagtt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agttgggtgagcttagatttccggggagttgcccccagagggccttggagagcttgagtt 410
Query: 121 cctataaccatgttgtttgtctgtccattcagaaattacataaggaaatcacatctaaaa 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cctataaccatgttgtt----tgtccattcagaaattacataaggaaatcacatctaaaa 354
Query: 181 caaacggtttccttttaat-aaaaaaaaaagtg-aaaaaaatcgcatatcaaggaaattt 238
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 353 caaacggtttccttttaataaaaaaaaaaagtgaaaaaaaatcgcatatcaaggaaattt 294
Query: 239 cctatgcattcatgtgacttagcaggaaacagtgctcatccaggaaacagatctcactgt 298
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ccaatgcattcatgtgacttagcaggaaacagtgctcatccaggaaacagatctcactgt 234
Query: 299 aaagcagacactgagaagagcgaggtggcttta 331
|||||||||||||||||||||||||||||||||
Sbjct: 233 aaagcagacactgagaagagcgaggtggcttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 729
Length adjustment: 9
Effective length of query: 322
Effective length of database: 720
Effective search space: 231840
Effective search space used: 231840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
