BAC Information

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BAC

Clone NameMSMg01-061F20
Chromosome5 (Build37)
Map Location 41,267,715 - 41,373,303
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061F20.T7 (MSMg01no061_f20.b1)MSMg01-061F20.TJ (MSMg01no061_f20.g1)
ACCAG287591AG287592
length753704
length of high quality
(start - end)		486 (45 - 530)565 (73 - 637)
definitionCHROMAT_FILE: MSMg01no061_f20.b1 PHD_FILE: MSMg01no061_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:19 2005CHROMAT_FILE: MSMg01no061_f20.g1 PHD_FILE: MSMg01no061_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,372,907 - 41,373,303)(41,267,715 - 41,268,279)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGA
ATTCCTCTCTGTTCTGCAAAAGTTTGTAAACAAGGAAAACATTTTAGTTT
CCTTAAGGCACTGAAATTCATAAATTATGTGTTTTTGAAGAAAAACCTAT
TCTGTTTTGATTAACATTATTTTAAACTCAGCATTCCAATATGATTCTCT
CAATATATATTGATTATCTTCAATTATTTTTATTTTTTCAGTTTTTTTAC
ATTGGATATTTTTGTTATTTACATTTCAAATGTAACCCCCTTTCCTCTTT
CCCCTCCCCTCCGAAAAAGCCCCCTCCTCCTCTCCCCTCCTCCTCCCCAT
GCTCATCAAACCCCTACTCCTGTTTCCTGGCCCTGAGATTCCCCTACATT
GGGGCATATATTAGAACCTTCACAGGACCAAGGGCCTCTCCTCCTATTGA
TGTCCAACAAGGCCATCCTCTGCAACATATGCAGGTGGAGCCATGAGTCC
TACCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCAGGGAGCTTCGGGTG
TACTGTTTGCTTCATGTAGATTTTCTTCCTATGGCGCTGCAAACCCCTTC
TGCTCTTTATGTCCTTTCTCTAGCTCCCTCATTGTGTACTCTATGTTTTA
TTCTATTGTACTATTATTTTTATTTAATTACGGGATGTTTATAACAATAT
TTGTGATTGATTACTTCCTCATACACTCTATTTCACCTACTGATTTTACT
ATN

AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGGATCTTCAGAAGAAATGTTACAGA
AAATCATAAATTATATACCATCCTAGAAACCGACAGCATTTTAATATAGG
TCAATACTGTGACCGAATGCCCCGCAGAAACTATTTAGAGGGAAAGGATG
AATTCTGCCCCCTGGTTTTGGGAATACGTGGTTCTGGGAAAGGGAGTATG
CCATGACTGTCACAGCTGGAAACCTGAAGTAGCTTCAGAATCAGAAAGCA
GTGCTTTCAGCTTGGAACCTGGATAGGTTAACATGGTCATGTTAACTTAT
ATTCCTGCATCTAATGTCTAGGAGCCACATCAAAAATTTCACGATCTCCT
GAAAGAGCATCAATATCACCCAACCAGGTGTTCAGACAGACAAGCATATA
AGGGGCATTTCAGACCCAAAGGATTCTAGTTGCACAGAGAGGTGGGATTT
TTAACGATTATTCATGTGAGTGTAGTTAATATTATTTATTACCCTAACAT
TTGTTTCTGTTACATAAAATAATATATACAGGAGCTTGGCATATGGTGTA
GTCAATAAAGTACCTTCTGTGCCAGCATGATGCCTTACGCTCAGATCACA
GTATCCTCTTAAAAGTTATGCAGAGTTAGGCATATCTATAATTTCAGTGC
TTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_f20.b1 MSMg01no061_f20.b1 CHROMAT_FILE:
MSMg01no061_f20.b1 PHD_FILE: MSMg01no061_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:19 2005
         (486 letters)



>mm_chr5_41372907_41373792
          Length = 886

 Score =  745 bits (385), Expect = 0.0
 Identities = 394/397 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctctgttctgcaaaagtttgtaaacaaggaaaacattttagtttccttaagg 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 397 gaattcctctctgttctgcaaaagtttgtgaacaaggaaaacattttagtttccttaagg 338

                                                                       
Query: 65  cactgaaattcataaattatgtgtttttgaagaaaaacctattctgttttgattaacatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cactgaaattcataaattatgtgtttttgaagaaaaacctattctgttttgattaacatt 278

                                                                       
Query: 125 attttaaactcagcattccaatatgattctctcaatatatattgattatcttcaattatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 attttaaactcagcattccaatatgattctctcaatatatattgattatcttcaattatt 218

                                                                       
Query: 185 tttattttttcagtttttttacattggatatttttgttatttacatttcaaatgtaaccc 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tttattttttcagtttttttatattggatatttttgttatttacatttcaaatgtaaccc 158

                                                                       
Query: 245 cctttcctctttcccctcccctccgaaaaagccccctcctcctctcccctcctcctcccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cctttcctctttcccctcccctccgaaaaagccccctcctcctctcccctcctcctcccc 98

                                                                       
Query: 305 atgctcatcaaacccctactcctgtttcctggccctgagattcccctacattggggcata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  atgctcatcaaacccctactcctgtttcctggccctgagattcccctacattggggcata 38

                                                
Query: 365 tattagaaccttcacaggaccaagggcctctcctcct 401
            ||||||||||||||||||||||||||||||||||||
Sbjct: 37  gattagaaccttcacaggaccaagggcctctcctcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no061_f20.g1 MSMg01no061_f20.g1 CHROMAT_FILE:
MSMg01no061_f20.g1 PHD_FILE: MSMg01no061_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:19 2005
         (565 letters)



>mm_chr5_41267515_41268479
          Length = 965

 Score = 1038 bits (537), Expect = 0.0
 Identities = 558/565 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggatcttcagaagaaatgttacagaaaatcataaattatataccatcctagaaaccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggatcttcagaagaaatgttacagaaaatcataaattatataccatcctagaaaccg 260

                                                                       
Query: 61  acagcattttaatataggtcaatactgtgaccgaatgccccgcagaaactatttagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcattttaatataggtcaatactgtgaccgaatgccccgcagaaactatttagaggg 320

                                                                       
Query: 121 aaaggatgaattctgccccctggttttgggaatacgtggttctgggaaagggagtatgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggatgaattctgccccctggttttgggaatacgtggttctgggaaagggagtatgcc 380

                                                                       
Query: 181 atgactgtcacagctggaaacctgaagtagcttcagaatcagaaagcagtgctttcagct 240
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgactgtcacagctgttaacctgaagtagcttcagaatcagaaagcagtgctttcagct 440

                                                                       
Query: 241 tggaacctggataggttaacatggtcatgttaacttatattcctgcatctaatgtctagg 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaacctggataggctaacatggtcatgttaacttatattcctgcatctaatgtctagg 500

                                                                       
Query: 301 agccacatcaaaaatttcacgatctcctgaaagagcatcaatatcacccaaccaggtgtt 360
           |||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||
Sbjct: 501 agccacatcaaaaatttcacgatctcctgaaagagcatcaatattagggaaccaggtgtt 560

                                                                       
Query: 361 cagacagacaagcatataaggggcatttcagacccaaaggattctagttgcacagagagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagacagacaagcatataaggggcatttcagacccaaaggattctagttgcacagagagg 620

                                                                       
Query: 421 tgggatttttaacgattattcatgtgagtgtagttaatattatttattaccctaacattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggatttttaacgattattcatgtgagtgtagttaatattatttattaccctaacattt 680

                                                                       
Query: 481 gtttctgttacataaaataatatatacaggagcttggcatatggtgtagtcaataaagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttctgttacataaaataatatatacaggagcttggcatatggtgtagtcaataaagta 740

                                    
Query: 541 ccttctgtgccagcatgatgcctta 565
           |||||||||||||||||||||||||
Sbjct: 741 ccttctgtgccagcatgatgcctta 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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