Query= MSMg01no061_g01.b1 MSMg01no061_g01.b1 CHROMAT_FILE:
MSMg01no061_g01.b1 PHD_FILE: MSMg01no061_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:20 2005
(566 letters)
>mm_chr5_7480779_7481744
Length = 966
Score = 1048 bits (542), Expect = 0.0
Identities = 556/561 (99%)
Strand = Plus / Minus
Query: 6 ggaattcactcattacccgatggtaatctggtacttaggtgaatagcagaggaaaaatgt 65
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 704 ggaattcactcattaccagatggtaatctggtacttaggtgaatagcacaggaaaaatgt 645
Query: 66 gcaatcatcaccctggttgggccaagagaatacacatagtgtagaactcaatagttggct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gcaatcatcaccctggttgggccaagagaatacacatagtgtagaactcaatagttggct 585
Query: 126 tgacccatgataaacccagaacattagttaatatcgatagatattatccaagtcttggcc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgacccatgataaacccagaacattagttaatatcgatagatattatccaagtcttggcc 525
Query: 186 aatttctccaatgtatcttgttaaagctcctagacaaacaattcagaggggccacctttt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aatttctccaatgtatcttgttaaagctcctagacaaacaattcagaggggccacctttt 465
Query: 246 tgaagatgctctcacattactcatgaatcctaatgtttctgacaacccatttttggaaac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgaagatgctctcacattactcatgaatcctaatgtttctgacaacccatttttggaaac 405
Query: 306 ctccctcatgggagcactgcttgttttatttcaccagtaaatctccttactttaatattt 365
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctccctcatgggagcactgcttgctttatttcaccagtaaatctccttactttaatattt 345
Query: 366 atttctgtattaaaaacttcttttagaccagacatggagaaaaggaactgcaactagatg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atttctgtattaaaaacttcttttagaccagacatggagaaaaggaactgcaactagatg 285
Query: 426 cccagaggacactaagccagtgacacctgagcttattgagctgcagccaatgaaccctca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cccagaggacactaagccagtgacacctgagcttattgagctgcagccaatgaaccctca 225
Query: 486 tggtaactgccaaggtgtttcaggaggcatcaaggagaagctaanattcaacaggtgatc 545
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 224 tggtaactgccaaggtgtttcaggaggcatcaaggagaagctaaaactcaacaggtgatc 165
Query: 546 ttcctgagagagttctgccat 566
|||||||||||||||||||||
Sbjct: 164 ttcctgagagagttctgccat 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_g01.g1 MSMg01no061_g01.g1 CHROMAT_FILE:
MSMg01no061_g01.g1 PHD_FILE: MSMg01no061_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:20 2005
(509 letters)
>mm_chr5_7333448_7334356
Length = 909
Score = 919 bits (475), Expect = 0.0
Identities = 502/513 (97%), Gaps = 4/513 (0%)
Strand = Plus / Plus
Query: 1 ataagccatctccaagctataatattcaagaatagctgcatataaacatataaagttatt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ataaaccatctccaagctataatattcaagaatagctgcatataaacatataaagttatt 256
Query: 61 caaattagacatgggcattttagtctttacatataatcttcttggcaactatactatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caaattagacatgggcattttagtctttacatataatcttcttggcaactatactatttt 316
Query: 121 taacacaaagctaatttttatcctcatctatacttaggaaattatagtttttctgataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taacacaaagctaatttttatcctcatctatacttaggaaattatagtttttctgataat 376
Query: 181 ggttatctatcatttgaacatatcatgtttttctttttttattagatatttt----attt 236
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 377 gtttatctatcatttgaacatatcatgtttttctttttttattagatattttcttaattt 436
Query: 237 acatttcaaatgttaccccctttcctcgtttcccttctgaaaacctcctaaccataaata 296
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 437 acatttcaaatgttaccccctttccttgtttcccttctgaaaacctcctaaccataaata 496
Query: 297 tcatttttacaaaaaaaaatgcctgtcttttaatcacttattatcaccttatcagtaagt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcatttttacaaaaaaaaatgcctgtcttttaatcacttattatcaccttatcagtaagt 556
Query: 357 atataatttatttctcctctcaaataatgaaattgcaccagagccattcctatccactta 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 557 atataatttatttctcctctcaaataatgaaattgcaccagagccattcctatccatttg 616
Query: 417 caagaaacttttaaacccacaaaatggttgtatctttgaattttaacacggaatattaag 476
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 617 caagaaacttttaaacccacaaaatggttgaatctttgaattttaacatggaatattaag 676
Query: 477 caaaagataatgagatggttcacagatattagc 509
|||||||||||||||||||||||||||||||||
Sbjct: 677 caaaagataatgagatggttcacagatattagc 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
