BAC Information

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BAC

Clone NameMSMg01-061O15
Chromosome5 (Build37)
Map Location 41,565,909 - 41,566,154
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061O15.T7 (MSMg01no061_o15.b1)MSMg01-061O15.TJ (MSMg01no061_o15.g1)
ACCAG288012AG288013
length720754
length of high quality
(start - end)
246 (70 - 315)248 (71 - 318)
definitionCHROMAT_FILE: MSMg01no061_o15.b1 PHD_FILE: MSMg01no061_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:01 2005CHROMAT_FILE: MSMg01no061_o15.g1 PHD_FILE: MSMg01no061_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAACTCCGCGGAATTCT
TTGTTCTTTCCCTGAAAAACATTTTTTAATGGGGTTATTTGATTTTCTGG
AGTCCACCTTCTTGAGTTCTCTATATATATTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAATATCCTTTCCCAATCTGTTGGTGGCCTTTTTGT
TTTATTTACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAGGT
CCCATTTGTCAATTCTCGATCTTACAGTGCAAGCCATTGCTGGAGTACTA
CTCAGCTATTAAAAAGTATCGATCCTATGAAATTCCTAGCCAAATGGATG
GACCTGGAGGGCGTCATCCTGAGCGAGGTAACACAATCACAAAGAAACTC
ACACAATATTTACTCACTGATAAGTGGATATTAACCCAAAACTTAGGATA
CACAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAGAATG
AAGACCAAAGTGTGGACACTGTGCCCCTTCTTAGAATTGGGAACAAAATA
CCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTCTGATGAAAGGATG
GACCATCTAGAGACTGCCATATCCAGCGATCCACCCCATAATCAGCTTCC
ATACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCT
GATATAGCTGTCTCTTGTGA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAAACCCAACTATTTCTTTCTCTATTTT
GTCTCTTGTATTTTCTATGGACATCTCTGTCCTTAGTGACCTAGGCCCTG
CATTCCTTTTTCTTGGGGACTTCAATTCTCTTAACTGCCAAAACTTCAAA
TTTCTCAAGCACATTTCCTGCTTCAAATATTTCCTGCTACATCTTAATCA
TCATGAGTTGGTTTAACATTTCCTAGAGAACAATTAAAGGCTGTCAACCT
CCACATCTAGAACCCCTTGTCCTGGATATGCCCTGGGGTTGACTACTCTA
TGGCTAGGACCAGATTTAATTTTGTTTCCTATAGACACCCGAACCATTTC
CTTTCTCAAGGAAAAACCCCTCCACCCAATTTTTAAATGAAAAATAAGGT
TTGGAAAAAACCAATAAAGGGAATAAATAAAGGGCAAAATAGAACAGGGT
TTTCCCAAATTCCCAGAAAAGAAACTTCCCCCCCTTGGGTAACCTAAAAA
AAAGCGCCCAAAAATTTTCTTATTCCCCGGGTGGAGGAAAAGGGCTCCCC
CAAAAAACCCAAAAGGGTGGTACACATATAAGGGGAAAAAACATGGGAAA
AAAAGGGGGCTTTTAAAAAAAATGGGGTGAATTTTGGATAAACCAGGGGG
AAAAAATTTGTTCACCCCCTCTCTGGAGAAAAAAAGGGGGGAGGAGGTTC
TCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_o15.g1 MSMg01no061_o15.g1 CHROMAT_FILE:
MSMg01no061_o15.g1 PHD_FILE: MSMg01no061_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:01 2005
         (248 letters)



>mm_chr5_41565709_41566354
          Length = 646

 Score =  441 bits (228), Expect = e-128
 Identities = 243/248 (97%), Gaps = 2/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaaacccaactatttctttctctattttgtctcttgtattttctatggacatctctgt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 agtaaacccaactatttctttctctatcttgtctcttgtattttctatggacatctctgt 260

                                                                       
Query: 61  ccttagtgacctaggccctgcattcctttttcttggggacttcaattctcttaactgcca 120
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttagtgacctaggccctatattcctttttcttggggacttcaattctcttaactgcca 320

                                                                       
Query: 121 aaacttcaaatttctcaagcacatttcctgcttcaaatatttcctgctacatcttaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacttcaaatttctcaagcacatttcctgcttcaaatatttcctgctacatcttaatca 380

                                                                       
Query: 181 tcatgagttggtttaacatttcctagagaacaattaaaggctgtcaacctccacatctag 240
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tcatgagttggtttaa-atttcctagagaacaattaa-ggctgtcaacctccacatctag 438

                   
Query: 241 aacccctt 248
           ||||||||
Sbjct: 439 aacccctt 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 646
Length adjustment: 9
Effective length of query: 239
Effective length of database: 637
Effective search space:   152243
Effective search space used:   152243
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)