Query= MSMg01no062_j01.b1 MSMg01no062_j01.b1 CHROMAT_FILE:
MSMg01no062_j01.b1 PHD_FILE: MSMg01no062_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:17 2005
(718 letters)
>mm_chr5_98953613_98954730
Length = 1118
Score = 1342 bits (694), Expect = 0.0
Identities = 712/718 (99%)
Strand = Plus / Plus
Query: 1 ttcacatatgctgctgttacacattatgtgtattaaattataacatctagccctcacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcacatatgctgctgttacacattatgtgtattaaattataacatctagccctcacatc 260
Query: 61 acccttccctctgttgcccctcatgtctcacaagtcccctccctttcatgacattttgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccttccctctgttgcccctcatgtctcacaagtcccctccctttcatgacattttgcc 320
Query: 121 attgtcactgttttgttacttcccgagatcctccaagcctgactaggtcatccatgcgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgtcactgttttgttacttcccgagatcctccaagcctgactaggtcatccatgcgac 380
Query: 181 catgggcttggtgcatgggattttgggtttgatgttctcccgacatgcctatactccaga 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 catgggcttggtgcatgggattttgggtttgacgttctcccgacatgcctatactccaga 440
Query: 241 agagcagggtgttgagaaatgcagccccaccacccacactaaaaccatgtaagactgcct 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 agagcagggtgttgagaaatgcagccccaccacccacactgaaaccatgtaagactgcct 500
Query: 301 ctggagactgaactctgaaggctagaattggagctcaggtttggaaaagtgtggaagcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggagactgaactctgaaggctagaattggagctcaggtttggaaaagtgtggaagcca 560
Query: 361 cctttccctcagacatcttcatccttgattcattaggaggccatgctctacagctggctg 420
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 cctttccctcagacatcatcatccttgattcattaggaggccatgctctgcagctggctg 620
Query: 421 catttcacagttcagccacctcggccaaagctaggtagtgcttggacaaaccatgcatgg 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttcgcagttcagccacctcggccaaagctaggtagtgcttggacaaaccatgcatgg 680
Query: 481 gtggagagacaaatattggtaaagcttgcatctctcctcagtttataactcccatgactc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggagagacaaatattggtaaagcttgcatctctcctcagtttataactcccatgactc 740
Query: 541 tgccctgttcatctttttccctttggtgtagaaatacaggcaagaacacatctgatccat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgccctgttcatctttttccctttggtgtagaaatacaggcaagaacacatctgatccat 800
Query: 601 tttcttcagtgtgttttatagattgttgttggtttgtagtaactggaattgggctatgct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttcttcagtgtgttttatagattgttgttggtttgtagtaactggaattgggctatgct 860
Query: 661 attcaaagctgtagtttgtacacgtctaccatttagattaaagaagatatgtatttca 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 attcaaagctgtagtttgtacacgtctaccatttagattaaagaagatatgtatttca 918
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space: 784464
Effective search space used: 784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_j01.g1 MSMg01no062_j01.g1 CHROMAT_FILE:
MSMg01no062_j01.g1 PHD_FILE: MSMg01no062_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:17 2005
(671 letters)
>mm_chr5_99089686_99090754
Length = 1069
Score = 1253 bits (648), Expect = 0.0
Identities = 665/672 (98%), Gaps = 4/672 (0%)
Strand = Plus / Minus
Query: 1 aaagaagactgccatttgaaaagtcaaatatggaggtctttacacaaatccttatcaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aaagaagactgccatttgaaaagtcaaatatggaggtctttacacaaatccttatcaaca 661
Query: 61 gtggctgtcatgggatagatagggaatctgtactcctttatgaaagaaaggaaaattcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gtggctgtcatgggatagatagggaatctgtactcctttatgaaagaaaggaaaattcat 601
Query: 121 ctgatgtggctttagattctggaaaggagagccaagactcaattgtgaggttctcacacg 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 600 ctgatgtggctttagattctggaaagtagagccaagactcaattgtgaggttctcacacg 541
Query: 181 agtgtctgttttcactgcacagtggcagcatctgcaaggctagagctgacactgagaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agtgtctgttttcactgcacagtggcagcatctgcaaggctagagctgacactgagaact 481
Query: 241 tacacgtgactccagtggaggagtgcac-ctttctctttcctcccacaaggggaaacggg 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 480 tacacgtgactccagtggaggagtgcacactttctctttcctcccacaaggggaaacagg 421
Query: 300 tagggctcagggggaccttacagaagactcacttctcctcacaaggactggagaaaaccc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tagggctcagggggaccttacagaagactcacttctcctcacaaggactggagaaaaccc 361
Query: 360 tgtgcacaagtggtttctagataacccttgtactgcagcttaaatggctttgcttccata 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgtgcacaa---gtttctagataacccttgtactgcagcttaaatggctttgcttccata 304
Query: 420 gcacaaattggaaagtagaaaattaaggaagaaatgatcttgtacttctacacgtacata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcacaaattggaaagtagaaaattaaggaagaaatgatcttgtacttctacacgtacata 244
Query: 480 gaaattttgagagttagaattttgaagtattatttttactatctgtcttagtcatggttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaaattttgagagttagaattttgaagtattatttttactatctgtcttagtcatggttt 184
Query: 540 ctattcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggtttattcagc 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 183 ctattcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggcttattcagc 124
Query: 600 ttacactttccacattgctgttcatcaccaaaggaaatcaggtctggaactcacacaggg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttacactttccacattgctgttcatcaccaaaggaaatcaggtctggaactcacacaggg 64
Query: 660 caggaagtagga 671
||||||||||||
Sbjct: 63 caggaagtagga 52
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1069
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1059
Effective search space: 699999
Effective search space used: 699999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
