BAC Information

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BAC

Clone NameMSMg01-063C02
Chromosome5 (Build37)
Map Location 116,355,959 - 116,356,259
singlet/doubletsinglet
Overlap geneCit
Upstream geneOasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032
Downstream genePrkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063C02.T7 (MSMg01no063_c02.b1)MSMg01-063C02.TJ (MSMg01no063_c02.g1)
ACCAG288942AG288943
length7601,454
length of high quality
(start - end)
301 (130 - 430)---
definitionCHROMAT_FILE: MSMg01no063_c02.b1 PHD_FILE: MSMg01no063_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:22 2005CHROMAT_FILE: MSMg01no063_c02.g1 PHD_FILE: MSMg01no063_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNCCC
ATTAANGGAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCATTTCTGCCCTTAGGAAGATGATTAATAGAGA
GGTAGGAGCCACCCTCAGTGAAGTAATTATGATTTCTGAATTTCTGTACT
ATAAAATAAGGCTCATCTGTAAAGTTCTGCCATGCTCAAAGCATTACTGC
GGTCAAGATTAGAAAAGAGGCTTGGGCTGCCAGTACAGGCCTATCACCTG
ATCACTCGGGCAGCTGAGGCAGGGGGATCAGAAGGCCAGGGCCTGCCTGG
GCTACAGATGATAAACTCAAGGAACATAGCGAGACTCGGTCTCTGGGGGC
TGTGGCGAGGTTGGAGAGTTGAGTCAGCCAACATAAGGGGCTGAGTACAA
TCCCCACAGGTTACAAATAAAATAAAGCCAAGCAGGATGGCACAGCCTCA
TCACCAGCACTGATTGGTGGGTGGAGGCTGGAAGATATCTGGCATTCCAT
GGATGGCCATCCTGTACTACATGAGTAGATCAAGGCCAGCGCCAAGATCA
CGTCCCAAAGAGAAGCAGGCAAAAAGCTTAAGTGGTGCCTACGTGCATAC
TGGCCTTCTCTCCTTCTTCTAAGATAACCGTCCTTTTCCGCCCTTCCTAA
CATCATTTCCCAACACTTCTTTCACTTTATGCTCAAAAGAACTTAATAAC
CTCTTCATGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTNNNNNTTTTNNNNNNNCCCCCNNNTTTNNCNTNTTCCCNCCN
NCNNCCNNNNNCCNTTNNTCTTNNCCGCTCCCCCNNNNNNNCCTNTTTTT
TCTNTTTCCCCTCCTTCTNNNNTCNCCNTCCCTCNNTCTCCTCCNNTNNC
CCCCTTATCTCCCNCCCCTTCCACTCTTTCTCTCTTCTCTTGCCCCTNCC
TCCCTTCTCTCCCCCCCCCNCCCTCCCCACCCCCGCTCTTTCATCCTTTT
NTCTCTTTACTCCTTCTCCCTCCTNNCTCCTCCTTCTTTCCTCCCTCTCC
TCCCCCTTCCCCATCTCTCCTCCTCCCGCCTCTCTTCTCCCCTCCCCTCT
CTATCCCTGTCCGCTCTTCTCCCCTTACTNATCTTCTCTTTCCTGTTACC
CCTTTTTCCCTATCTCTCACCTCCCCTCCACTCTATTCTCCCCCCTTTTT
CTTACCTTATCTTTATTCTTGTTTCTCCTCTCTACTCTCTCCTCTCTCCT
CCCTATTCTCCATCCTCCTTCCTGTCTTCTCCTCCCTTCTCTCCTCTTCT
CTCTCTTTACTCTCTCCTACTCCTTCCTCTCTTCCCTCTTCTTCTCNNTT
TTCTTCTTCNTCTCTCCTCTTCGTCCCCTCTCGTTCCTCCGCTCTCTCTT
CTCCCCTTTCTCTTCCTCTTCTTCTCCTCNCCCCCCGCCNTNNNNCTCTT
ACTCTCCCTTTTTCCTCCTTTCCTCCCCTTCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAACAGAGTTGGNNCGATTNNNNTCTACA
TGAATCTCGTCTATCNNTTTTACTCTCTTCCNNCNNCNCCNNNNNTNCNN
CNCCCTTTCACTAGCTCTCTTTNCTATCCATTTATCTTCNTTCTTCTCTC
CTCTCTTNNNNNCCNNCTTGCCTCTGCCACGCGCCTTCTCTCTTTACTTT
TTATTTATCTCTTATCCTACCTTATTTCTCTATCATACTATCTCCTCTCT
TTTCTTCCTCTTCTTCTCTCTTTCTTAATCCCTCCTCTCTCTCATCATTT
ACTCTTCTACCTCTATCTTTTCTCTTTCCTTCCCTTTCTATGTTTGTCCC
ATCTATTCTTCTTCTTCTTCTTCTCCTCTTCCCTCNTTACCTTCTCCCAC
TTNTATCATCTCTCTCTCATCTTTTACTATACTTCCTCCTTCTCCTCCTG
CTCTCTCTTTCCTTATCTNCTCCCTCTTTCTCTTCTCNCTTNTATTTTCT
CTCCTCTCCTCTACTCTTCCCTCTCCCTCTCTTNTTTATTTCTCTTTTCT
CTCTTCTNCCTCTNCTACTTCTATATCTTCTGTGCTCTCTTTCTNATCTC
TCTCATCTCTCCTNCTTCTCCCTACTCCACCTTCTCACTCTTCTCTCTTC
TCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_c02.b1 MSMg01no063_c02.b1 CHROMAT_FILE:
MSMg01no063_c02.b1 PHD_FILE: MSMg01no063_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:22 2005
         (301 letters)



>mm_chr5_116355916_116356616
          Length = 701

 Score =  574 bits (297), Expect = e-168
 Identities = 300/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggaagatgattaatagagaggtaggagccaccctcagtgaagtaattatgatttctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 taggaagatgattaatagagaggtaggagccaccctcagtgaagtaattatgatttctga 285

                                                                       
Query: 61  atttctgtactataaaataaggctcatctgtaaagttctgccatgctcaaagcattactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atttctgtactataaaataaggctcatctgtaaagttctgccatgctcaaagcattactg 225

                                                                       
Query: 121 cggtcaagattagaaaagaggcttgggctgccagtacaggcctatcacctgatcactcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 cggtcaagattagaaaagaggcttgggctgccagtacaggcctatcacctgatcactcgg 165

                                                                       
Query: 181 gcagctgaggcagggggatcagaaggccagggcctgcctgggctacagatgataaactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gcagctgaggcagggggatcagaaggccagggcctgcctgggctacagatgataaactca 105

                                                                       
Query: 241 aggaacatagcgagactcggtctctgggggctgtggcgaggttggagagttgagtcagcc 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 104 aggaacatagcgagactcggtctctgggggctgtggggaggttggagagttgagtcagcc 45

            
Query: 301 a 301
           |
Sbjct: 44  a 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)