CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGGGGAAAAGACAA
AACAAAACAAAAAAGTACTTTTGAGACATTATTACTTAGCTGGTATTTGA
GCATCATAGTCACTTCCAGCAACTGATTACCATGCTATGCTTTATATAAC
CCATGTCTTCCTTATGTTTGGTTCTTATCTTTAATCCCAGAACTGGATTT
CTCATTGAATGCTGAATTAATATGTGTTGTGTTTTAAAAAATAATTCATG
AAAACACATTTAAAAATAAAAGAAAACTAACCTATTTAAGTAACTTCTAT
TTACAAGTTATACTTAACATTAAATTTGCATTTTGCTTTTATTTAACTGA
TGAATTAAAATATGTAAATTCTATTTGACAACACATATAAAAATTCTAAA
ATATTTGCATTTTGCTTATATTGAAATTTATATTTTTATTAGATATTTTC
TTTCTTTGCATTTCAAATGTTATCCCCTTTCCTAGTTTCCCCTCTGAAAA
CACCCTATCCCCTCCTGCTTCCCCCTGCTCACCAACCCACCCACTCCCAC
TTCCTGACCCTGGCATTCCTCTATCCTGGGGCATATAACCTCCCCAGGAC
CAAGGGCTTCTCCTCCCATTGATGACCAACTAGAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATTC
CACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGTTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGGAGGACACATGCTCCACTATGT
TCATAGCAACCTTATTTATAATAGCCGGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTANAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCCCCAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTA
GGATACCCCCGATATAAGTTAC

Query= MSMg01no063_i23.b1 MSMg01no063_i23.b1 CHROMAT_FILE:
MSMg01no063_i23.b1 PHD_FILE: MSMg01no063_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:58 2005
         (610 letters)



>mm_chr5_40795961_40796972
          Length = 1012

 Score =  907 bits (469), Expect = 0.0
 Identities = 574/633 (90%), Gaps = 42/633 (6%)
 Strand = Plus / Minus

                                                                       
Query: 11  ttccaggacagccagggctatacagagaaaccctgtctcggggaa--------------- 55
           ||||||||||||||||||||||||||||||||||||||| |||||               
Sbjct: 730 ttccaggacagccagggctatacagagaaaccctgtctcagggaaaaaacaaaacaaaac 671

                                                                       
Query: 56  ---------------------aagacaaaacaaaacaaaaaagtacttttgagacattat 94
                                || ||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaaaaaaaaacaccaaaaaacaaaacaaaacaaaacaaaaaagtacttttgagacattat 611

                                                                       
Query: 95  tacttagctggtatttgagcatcatagtcacttccagcaactgattaccatgctatgc-t 153
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 610 tacttagctggtatttgagcatcatagtcacttccagcaactgattaacatgctatgctt 551

                                                                       
Query: 154 ttatataacccatgtcttccttatgtttggttcttatctttaatccc-agaactggattt 212
           ||||||| |||||||||||||||  || ||||||||||||||| ||| | ||||| ||||
Sbjct: 550 ttatatagcccatgtcttccttacattcggttcttatctttaa-cccgataactgaattt 492

                                                                       
Query: 213 ctcattgaatgctgaattaatatgtgttgtgttttaaaaaataattcatgaaaacacatt 272
           ||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||
Sbjct: 491 ctcattgaatgctgaattaatttgtgttatgttttaaaaaataattcatgagaacacatt 432

                                                                       
Query: 273 taaaaataaaagaaaactaacctatttaagtaacttctatttacaagttatacttaacat 332
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 taaaaataaaa-aaaactaacctatttaagtaacttctatttacaagttatacttaacat 373

                                                                       
Query: 333 taaatttgcattttgcttttatttaactgatgaattaaaatatgtaaattctatttgaca 392
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taaatttgcattttacttttatttaactgatgaattaaaatatgtaaattctatttgaca 313

                                                                       
Query: 393 acacatat--aaaaattctaaaatatttgcattttgcttatattgaaatttatattttta 450
           ||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acagatataaaaaaattctaaaatatttgcattttgcttatattgaaatttatattttta 253

                                                                       
Query: 451 ttagatattttctttctttgcatttcaaatgttatcccctttcctagtttcccctctgaa 510
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 252 ttagatattttctttctttgcattacaaatgttatcccctttcctagtttcccctctgaa 193

                                                                       
Query: 511 aacaccctatcccctcctgcttccccctgctcaccaacccacccactcccacttcctgac 570
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 192 aacaccctatcccctcctgcttcctcctgctcaccaacccacccactcccacttcctgac 133

                                            
Query: 571 cctggcattcctctatcctggggcatataacct 603
           ||||||||||||||||||||||||| |||||||
Sbjct: 132 cctggcattcctctatcctggggcacataacct 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1012
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1002
Effective search space:   601200
Effective search space used:   601200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)