BAC Information

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BAC

Clone NameMSMg01-063O03
Chromosome5 (Build37)
Map Location 25,176,236 - 25,176,415
singlet/doubletsinglet
Overlap genenone
Upstream geneNub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443
Downstream geneXrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063O03.T7 (MSMg01no063_o03.b1)MSMg01-063O03.TJ (MSMg01no063_o03.g1)
ACCAG289509AG289510
length664672
length of high quality
(start - end)
170 (369 - 538)191 (77 - 267)
definitionCHROMAT_FILE: MSMg01no063_o03.b1 PHD_FILE: MSMg01no063_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:25 2005CHROMAT_FILE: MSMg01no063_o03.g1 PHD_FILE: MSMg01no063_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATCCT
ACCCATGACTCGCCAAATCCAAGGAAAATTCTTTACCTCTCTATATCAGA
TTTCCCCACTCCCCTCATCACAGCTAAGGCAATGATACTATGGAGATGAC
ATACATAAAAATGATATAATGTTGTGCTTATATATCTCATTACCATTTTA
CTATCATTTTTAGATGTTCGAAATATATAGGAACTTAGAATTTTGAAAAG
TAGCCAGGTAGAAGATGCACACACTTATAATCCTGGCACTTGCGAGGTAA
GAAAAGACTGGGAGCGCAAGGCCATCTCAGTTTCAGTTGTACAGCAAGCA
AGTTCAAGGCGACCCTAGGACATGAGACCCTTCAGAAAAAATATTTTTTT
AACTTTTTATTGGTTCTTTGTGCATTTCATATCATGCACTGTAATCTCAC
TTCTCTCCCCTTCCCCTCATAACCGACCTCCACCCTTGTAACCTCACCCA
CAACAAAGAAAAAAAATCTTATTGTGGAAGCTGTAGTCTGTCACAGTGAG
TCATACAGCATACCCTCTTGTCCATGCTTCTTTGCTTGCAAGTGTTCACT
GCAATGAGTTCCTGGTCTGGTGCAAGGCCTCTGCTACTCTATCAACACTG
GACCCTCACAGGGT
ACTCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGGGGTTCCTAATGAAGCATAG
GTGGAGGATTATTTCTGGGTGTCTGTGAGTCACACTGCAGTCTTTACCCA
GCAGGAATGAGGGCTTCCCCATAGCACATAGATAGAGCCCCTGTGCTGGT
CTTTCTAACCTATACACTCTAGCCCTTTCCTGAGGTCAATTGTGTTTTCT
TGATTGAGACAGGGTCTTATCGTGTAGTAGTGCGTGATGGCTTGCAACTA
ACTCTGTAGAGCAGGGTTGCCTCAAGCTCAGAGATCTGCCTGCTTCTGTC
TCCGGAACATTGTGATCCACCCCGCCCACCACCCTACTAAGCCGTATGAT
GTGGCTTTTCAACATCTGACAGAACACTGACTACTTCATGTGGACGAGTG
TTCTCCATAACATGGTGTGTTTAGGTTTAGCTCTCACATGTAGGATCTGA
ATTACCTTTACATTTGCAAACTTCAGAAAGGAGAACGTTTCTTGCTGCAG
AAATGCAGTGAAGTCTTCAAGAGGCCCTGGGAACCCTTGTCTGTGAAGTG
AGGATAAAAAAGCGAAGCTTACTGGTTTGACTAGTTTCTTTTTTATTTTT
AAATATGGATGAGCCCGCGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_o03.g1 MSMg01no063_o03.g1 CHROMAT_FILE:
MSMg01no063_o03.g1 PHD_FILE: MSMg01no063_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:25 2005
         (191 letters)



>mm_chr5_25176029_25176615
          Length = 587

 Score =  313 bits (162), Expect = 3e-90
 Identities = 177/184 (96%), Gaps = 4/184 (2%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcctaatgaagcataggtggaggattatttctgggtgtctgtgagtcacactgcagtct 67
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 208 ttcctaatgaagcataggtggagggtcatttctgggtgtctgtgagtcacactgcagtct 267

                                                                       
Query: 68  ttacccagcaggaatgagggcttccccatagcacatagatagagcccctgtgctggtctt 127
           |||||||||||| ||||||||||||||||||||||||||    |||||||||||||||||
Sbjct: 268 ttacccagcagggatgagggcttccccatagcacataga----gcccctgtgctggtctt 323

                                                                       
Query: 128 tctaacctatacactctagccctttcctgaggtcaattgtgttttcttgattgagacagg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctaacctatacactctagccctttcctgaggtcaattgtgttttcttgattgagacagg 383

               
Query: 188 gtct 191
           ||||
Sbjct: 384 gtct 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 587
Length adjustment: 8
Effective length of query: 183
Effective length of database: 579
Effective search space:   105957
Effective search space used:   105957
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)