BAC Information

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BAC

Clone NameMSMg01-064A19
Chromosome5 (Build37)
Map Location 74,729,881 - 74,730,265
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18, Usp46, 2700023E23Rik, Rasl11b
Downstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064A19.T7 (MSMg01no064_a19.b1)MSMg01-064A19.TJ (MSMg01no064_a19.g1)
ACCAG289630AG289631
length1,2451,257
length of high quality
(start - end)
429 (141 - 569)387 (70 - 456)
definitionCHROMAT_FILE: MSMg01no064_a19.b1 PHD_FILE: MSMg01no064_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:41 2005CHROMAT_FILE: MSMg01no064_a19.g1 PHD_FILE: MSMg01no064_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTTTTTNNNNNGACACTGGGCGCTAAGACTCCTATGGGAGAGGATCC
GCGGAATTCTCCCCCACAGACCCCAACCATTTAAAACTCCAGTTAGTTGA
ATCTGTGGATATGGGACCCTGTGGGTTGTTTGTCCCCTTGTTTAATGTAT
ATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATC
CATTATAGATGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAG
GACCTCTGGAAGAGCAGTCAGTGTTCTTAACCACTGAACCATCTCTCCAG
CCCCCAGAATTGTTAAAAGAGATAACTGGAAAAATGGGTAATGGTTTTTA
CATATGTGTGTATGCATATGTATGAATTTGATATGTAAGGCACAGTAAGA
TATTGATATATTTATTAAACAGCATCATTATAGAAAACTATAGTAGAAGT
TATATGAATATGGTCTTTCTCTAAATATATCCTTTTGCAGTGTGGTCACC
TTTTTGTTTTTCTGATGCTGCTGTGAGATGATGTAATATCTACATTAGAC
AGAGTGAGGTAAGTCACGGAGACACTGTGAGTGGTGGTAAGCTAGTATGT
AAAGGTTACTTAAATGTAGCGCTGTGACAATTGCTCTGATAACCAAGATA
GCTAACAGTTGGTTAGCATATACAATATGGATTCGCTGGACTGTGAGATG
ATTTGTGTCCTGTTTTACACAGAGAACAGTGAAATTTCCGCCTATGTACT
TTTGTAATCTGAAAAATTATTTAATTCTTGCTTTGCTTGTTTCCCATTTT
TGCACCCACAGCTAATCTTGTGGTTTACTAACCCTTTGTATATTATCAAA
TCTTTCTTTGTTTATTAACGTTCCTTTCTGTTTTAATTATCGTCTATTTC
CGCTCCTGTCTTTATTCATTTATAAATTTTATCTTGTTTTATATTTTTTC
TCTTTTTTTTCATTTATTTTTTTTATTTTTTATTTCTTTTTTCTTTTATA
ATCCTTTTTTTTTTTTTTATATTTTTTTTTTCCTTTTCATTTTTATCTCT
TTATTTCTTNTTCTTATTTTTATTCTATTTTATACAATTTGTTTAATTCT
CAATATTTTCTTCTTTTATTTTTCCTTTCCTATTATTTTATAATATTTTT
CTTTGCTTTTACTCTTTTTCATTTTTTAATTTATTCTCTAATTGTTACTC
AATATATTACACTTAAATTTCCCCTATTTATTATTCTTTTATTTA
NNNTTATCATGGAGNCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAATGGGAAGGCTCACAGACTTCAGACAGA
GGCTTGACTGCTATGCAAAAGTCTCCCCGCAAATCTATTTTTCATCAAAA
CCAGACTACTGCAGTGAGAGTGATTGAAAATGAGCCCTGCTGTGAACATT
TGAGCATCAGTAAAGTAAAATACAGGAGCCCAATTATCAATCAGAAAAGG
ATCTGAGAAATCACAGTTGCCTTTACAGTTGAGGCTGAGCCATGATAAGG
CAAAAAGTCATGCCCAGAGACGGCTGCAGTCCCGTGCAGTCCTCTTCAGA
TTCGTGCAAGGATTTGCCTGTGGCCCAGAGCTAGATTCCAGTGGGTGCCA
GTAAATAACGTAGTAAATACCACTCAGAAAACACCACTTTTCTAGACTTG
TGTTTTTTTTTCCCCCCTCAGAAGTATCTCCTCCACATATTGAACTTATT
AAGAAAAATTCTGGGAAACATGCAGCTCTTCTAGAGTCAATTTATGTTTC
CAATTAATTTTCAAAAAGCATTACATTTACAGCCTGATGTTGGCCAGCAC
TCTTTCAAAAATCCATGGCAAAAACCATTTTATTTTCACTGAATGCAATC
TTCATAAAATTTCAGTATTCTGGCTTACAGTTATGTGTAATGTTCCAAGA
AAATATCTAAGATCTATATTTCCCAGGGCTTCCTTGGACTGTGACATTCT
CTGCCTGGATTGCTGTCTTGTTTATCATAGACCTTTTCCCGTGNCCCAGC
TTGGATGGAATGCATTCTTCGGCCTACAGTGGATTAAGAAAGTCTTTACA
CTGATTAAACACTTTTCTGTGAAAAAAACAGCCTTAAATCTGAGATGAAA
AGCTTTGGAAGGCCCCTGGAAGTTGAAACCTCCTTGTGAACCATTGCCCC
ACCGTGTTTTTTCACCTGGGTTTTGCATTTTTTTTTGCTCAATTTCTTTT
GGGAAATTTCTTTTGCCATTTTTTTTATTAAAAAAAACTCTTTAATTTTT
TTTTTTCCTAACCTCTCAAAAATTGGTTAATATTATTTAGTTTATTTAAT
CACATTTCTTTCTTTCCCAAATTTTTTTTTAAATTAACATTTTTTAATTT
TCTCGTTTCTTTTCTCTATAATAATTTCACTCTATTTTTTCTTCTGTAAA
TAATTATTATCTTTTAATCTTATTATATCATAAATCTTCCTTTCTTTTTT
TATACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_a19.g1 MSMg01no064_a19.g1 CHROMAT_FILE:
MSMg01no064_a19.g1 PHD_FILE: MSMg01no064_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:41 2005
         (387 letters)



>mm_chr5_74729681_74730467
          Length = 787

 Score =  729 bits (377), Expect = 0.0
 Identities = 383/385 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaatgggaaggctcacagacttcagacagaggcttgactgctatgcaaaagtctccccg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 585 ctaatgggaaggctcacagacttcagacagaggcttgactgctatgcaaaagtctccttg 526

                                                                       
Query: 61  caaatctatttttcatcaaaaccagactactgcagtgagagtgattgaaaatgagccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 caaatctatttttcatcaaaaccagactactgcagtgagagtgattgaaaatgagccctg 466

                                                                       
Query: 121 ctgtgaacatttgagcatcagtaaagtaaaatacaggagcccaattatcaatcagaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctgtgaacatttgagcatcagtaaagtaaaatacaggagcccaattatcaatcagaaaag 406

                                                                       
Query: 181 gatctgagaaatcacagttgcctttacagttgaggctgagccatgataaggcaaaaagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gatctgagaaatcacagttgcctttacagttgaggctgagccatgataaggcaaaaagtc 346

                                                                       
Query: 241 atgcccagagacggctgcagtcccgtgcagtcctcttcagattcgtgcaaggatttgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atgcccagagacggctgcagtcccgtgcagtcctcttcagattcgtgcaaggatttgcct 286

                                                                       
Query: 301 gtggcccagagctagattccagtgggtgccagtaaataacgtagtaaataccactcagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtggcccagagctagattccagtgggtgccagtaaataacgtagtaaataccactcagaa 226

                                    
Query: 361 aacaccacttttctagacttgtgtt 385
           |||||||||||||||||||||||||
Sbjct: 225 aacaccacttttctagacttgtgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)