BAC Information

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BAC

Clone NameMSMg01-064G23
Chromosome5 (Build37)
Map Location 82,361,381 - 82,362,086
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064G23.T7 (MSMg01no064_g23.b1)MSMg01-064G23.TJ (MSMg01no064_g23.g1)
ACCAG289907AG289908
length1,1751,200
length of high quality
(start - end)
707 (86 - 792)34 (408 - 441)
definitionCHROMAT_FILE: MSMg01no064_g23.b1 PHD_FILE: MSMg01no064_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:22 2005CHROMAT_FILE: MSMg01no064_g23.g1 PHD_FILE: MSMg01no064_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATCCCTNNNNAAACATTGGCGCTAACACTCCTAAGGGAGAGGATCCG
CGGAATTAGATTCCAGTTTAATCCCTTTAAAGTGTAGGTGCATTTATTTT
CAAGTCTTTTACCCCTTTTCCAGTTCTTCAAACCATACAACTTAAAATCA
GAGTTAGCATGCTTTCATTTCATTCATGTAATTTAGTTAATAGACTTCTG
CAGAATGAATGAAGTTGATTACAGTTTTCAGAATCTGCCGTTGTGATTAT
CAATGTCCTTGGGCTGATCTTATTTGAAAAAAATTTGGCATGACCATATG
TACATGTTAAAAGAAGCAACCTGAAAATTTAAAGGTCTCCCCCCCCCAAT
TGATTGATGGACAATTTTTGAAGAACGCGGTTTATCAAGTAGCCTTTCCT
CTCTACTTCCAGAAATCCCTGTTTCAGATCAGTATAATTTCCTGTGAAAG
TTGGCATCTACGACATGAGATACCCTTGTCTTTTGACAGTAGAGGACATT
TGCATGTGCTGTACGGTTATTCTTGACAGCAATGAAACTGTCAAGTGTGA
TACATCTGTAAGAATCTTTGTGTGAGTAAGCAACCACAGATATGTTTTCT
TAACCAACAGAGCAAACAAACAGCTAAAATTAGATGCATTGTGTACTGGT
GAAAGATACAAAATATGGCACAATTTTTAAGAAACACAATTATAAGGAAT
CAGGGGATTTGCTTTTTCAATAATGCATAGGATCGAAAGAAAGCCATTTG
AAAAATGACCCACAAAAATTCAAGTGATTCTAATAGGAAATACTAGGTAA
ACACAAATTACTATGCCATCTCAAAATGGGGGTAAGGATAGACATGTGAA
CTGTCATTGGAAGAAATGTAATAAAAGTTAAATTAAAAAAATTTTAAAAA
CCCCAAATTTATATTTGCACTTATTTAAAAAAAAAAAAGGCCTTCTATTC
ATTAAAAAGGAAATTTATTGGGTCAATTGGTTCCCCCCGCGGTGGTTTAA
ACGAATTTCTCTTTCAACTCCTAAAAAAACCCTATTTTCTGGAGATATGA
CGGTTTTTTTAAATGGAAAACCAAAAACCCCCTATGCCCGGGTATAAACC
TTGTTTTAAAATCAATATTGTCTCCATAAAAATTTTAGGTTTTATATTGT
AAAAACCGCCAAATGTTTATACTCN
NNNGGATCAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTCTATGGGACTCTGAGGTCACATTC
CTTTCTGCTAATAAAACAGGTCACGCCTGGAGAATAACTTTTTTCCTGCC
CTGTGCCCGTTCTTACGTTGTTAGCAAATGGAAGACAAAGGCTAGGCTAG
ATATGCTCTGGTAAACAGATCACCTAAAAAACAAGTAGAGTCACTGTGGA
ATTGATGAAACTTTAAATTGTGGTGAGGCATCCACTAAGCAAAATGTCAC
TGAATTAACATCATAGTAGGCTCTGACCCAGCTTCTCACTGATCTCCCTA
CTCCGTGGACAGGGGAGAGAGAGAATCAGGAGGAGTCGAATAAGAGAGAT
TTAGAGAACTGAGGTCTGCTGACCAAATAAACTTCTCTGAACTCTTCTAT
TTTTTTTCCCCCCCCCCCGGAAGTGATTGGCCTAGAAAAAAAAAATTTCT
TACTGTGAAAAATTTAGCAATTTGTTACTTAGGATTCTTGTGATTCCTTA
TCTAAGGGCCATCTTACAAACCATATCTTATTTGGCTCTCCACAATCCCA
CACTAGTATTTGTAATAGATTGCCACTCGTTAATTCTGATAACCTTTTCC
CTTTTAAGACGGTAATGTTCCCAACTATTTCTTCTCAAAAACGTGACAAC
TTTACCAGGAATTAAATACAAATGCCCTTCAGCTGAGTTTAGAGCCATCT
CTCTGGAACATAGAATTGTCCCCATTCCACACACTTCACGAAAGTGTTAC
TGAAATAGATTCCGTTCATAAGGAAGTTGATCATGTTGGGGAACTCCTCC
AACCCAAGATGTAATGCCCCATACTTTTTATACCCATTTTTCCCTTTTGG
GAAAAACGGAATTGCCCCCTCCAAAACTGTTTTTAATACCGCTCAAAAGG
GGGGAATTCTCCAAGAAAAGGTTTGGAAAAGGGCTCCTCTCTTTCCATTT
CCCCCCCTTTTAAAAACCTTTATGTTCAAGTCTCCACCCGGGTAAACATC
ACAAAAAACTTAATTCCCACCCCCCCATTTTTCCATTTTTTCCTTTTTGG
TTAAAGGGGGTTTTCGAAACCCTCTCACCCCCCTTCATGTGGGCTTATCC
CTTCTATTGGGACGGTGTTTCTCTCTTGGTATATATAAGCGTACTTTGAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_g23.b1 MSMg01no064_g23.b1 CHROMAT_FILE:
MSMg01no064_g23.b1 PHD_FILE: MSMg01no064_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:22 2005
         (707 letters)



>mm_chr5_82361181_82362286
          Length = 1106

 Score = 1261 bits (652), Expect = 0.0
 Identities = 694/708 (98%), Gaps = 3/708 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgcatttattttcaagtcttttaccccttttccagttcttcaaaccatacaacttaa 60
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 201 aggtgcatttattttcaagtcttttaccctttttccacttcttcaaaccatacaacttaa 260

                                                                       
Query: 61  aatcagagttagcatgctttcatttcattcatgtaatttagttaatagacttctgcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcagagttagcatgctttcatttcattcatgtaatttagttaatagacttctgcagaa 320

                                                                       
Query: 121 tgaatgaagttgattacagttttcagaatctgccgttgtgattatcaatgtccttgggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatgaagttgattacagttttcagaatctgccgttgtgattatcaatgtccttgggct 380

                                                                       
Query: 181 gatcttatttgaaaaaaatttggcatgaccatatgtacatgttaaaagaagcaacctgaa 240
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcttattcaaaaaaaatttggcatgaccatatgtacatgttaaaagaagcaacctgaa 440

                                                                       
Query: 241 aatttaaaggtctcccccccccaattgattgatggacaatttttgaagaacgcggtttat 300
           |||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttaaa-gcccccccccccccattgattgatggacaatttttgaagaacgcggtttat 499

                                                                       
Query: 301 caagtagcctttcctctctacttccagaaatccctgtttcagatcagtataatttcctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caagtagcctttcctctctacttccagaaatccctgtttcagatcagtataatttcctgt 559

                                                                       
Query: 361 gaaagttggcatctacgacatgagatacccttgtcttttgacagtagaggacatttgcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaaagttggcatctacgacatgagatacccttgtcttttgacagtagaggacatttgcat 619

                                                                       
Query: 421 gtgctgtacggttattcttgacagcaatgaaactgtcaagtgtgatacatctgtaagaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgctgtacggttattcttgacagcaatgaaactgtcaagtgtgatacatctgtaagaat 679

                                                                       
Query: 481 ctttgtgtgagtaagcaaccacagatatgttttcttaaccaacagagcaaacaaacagct 540
           ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 680 ctttgtgcgagtaagcaaccacagatatgttttcttaaccaacagaacaaacaaacagct 739

                                                                       
Query: 541 aaaattagatgcattgtgtactggtgaaagatacaaaatatggcacaatttttaagaaac 600
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agaattagatgcattgtgtactggtgaaagatacaaaatatggcacaatttttaagaaac 799

                                                                       
Query: 601 acaattataaggaatcaggggatttgctttttcaataatgcataggatcgaaagaaagcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 800 acaattataaggaatcaggggatttgctttttcaataatgcataggatcaaaagaaagcc 859

                                                           
Query: 661 atttgaaaaatgacccacaaaaattcaa-gtgattctaataggaaata 707
           |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 860 atttgaaaaatgacccacaaaa-ttcaaagtgattctaataggaaata 906


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1106
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1096
Effective search space:   763912
Effective search space used:   763912
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)