BAC Information

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BAC

Clone NameMSMg01-064H24
Chromosome5 (Build37)
Map Location 14,951,397 - 14,951,629
singlet/doubletsinglet
Overlap geneSpeer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064H24.T7 (MSMg01no064_h24.b1)MSMg01-064H24.TJ (MSMg01no064_h24.g1)
ACCAG289956AG289957
length838751
length of high quality
(start - end)
244 (46 - 289)---
definitionCHROMAT_FILE: MSMg01no064_h24.b1 PHD_FILE: MSMg01no064_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:28 2005CHROMAT_FILE: MSMg01no064_h24.g1 PHD_FILE: MSMg01no064_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAGGTTCTTTCTCTAGATCCAGAACAGGCACAAATGCTGTCTA
TTTATTAGATGCTCTTCTTGAAACTATGGATAATTAAAATATCAGTTCAG
TTAACTTGTGGAGAAAAATAACTCAGAACTTGGCTATAGATGTTATAACT
TACTTTGAATGTATGTGTGCATGTGCATTGTGCCTGAGAGTATGGGTGAG
TGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTACCCACCTATCCC
CCTCCCCCATCCCCCCATCCCCCCCCTTCTCATACACACTCCTCCCCTAC
CCACCCAACATTTTTTTATTTCCCCCACCCCCCCCCCTTCTTTTTTTTTT
TTTTGAATTNNNNNNTTGTGCCCCCTTACAAAAAATAAAAAAAACTCTCC
GGTGGGGGGGGCGCCCTTTCCCTCTCTTCCCTTATCCCCCCATCCTCTTT
TCCTCCATTCCAATATCCTTATCACATCCCACCCTCCTCCTACCCACCCC
TCCCATTTCTCCCCTCACATTCTCCCCCATCCCCCCCCTCATTTTCCCCA
TTCCCCTTCCCTCTTTAATCATACCCTCTTCCTCCCTCTATCCGCCAATT
CCGCCCACCCCCTCCCCCCCATTTTTGTCCTCTTTTTGCCCCCCGCAATC
CCCCACCCTCCCACCCCCTTCCCCCCTCTATCTCCACCCCCAAACCCTAC
TCCTCTCTCCCCCCAACTCCCCCCGTCCTCACACCACACACTTATCCCCC
CCATTTTAAAAACCACCTTTTCCTCCCTCTCCTTCCTN
CATGCAGTTGGTAGCCTGGGGGCCCGCCGGGCCGCCAAATTAAGGGGAAC
TATAAAAGGACCCGGGAATTCCATTTGGAACCGAAAGGACCGGACCAAAA
ATCCCGGGAACCCAAAACCCGGTCCTTGAAAACAACCACCAGGGAAAATT
AAGGTTAACCCAATTAACCGGAAGGGAAAAAAAACATACCCCGAATAACC
AAATCCGAAATGGAACCGGGAAACTAACCATGGACCCTGGAGAAATTGGA
AGAATCCCTAAGGCCTAATGGAAAAAGCCGGACCGGCAAAAAAAACAAAA
TCCCAAAGGAATGGGGGGACTAATAAACGGTATCCATTAACCAAGGTAAA
TGGAAAACCGGGAAATTTTTTTACCCGCCCCCCCCCCCCCAAAAAAATAA
AAACCGGCCTCCAAAGGCCCCCCCCCCCAAAAAACCCAAAGGCCGAATGG
TGGAGTGGAAAAATCCACCAAAAAATCCAAAAAAAAGTAGGGGAAAACCC
CCCCAATTATTCCTCAAGGAAAAACCGAAGAAACCTTGCTTAACTCCTTC
CAAGAAGTCCAAAGCCCCCCGGGACCGAAACCCCCCCAAGACTCCACAAA
AAAAGGGGAAATTCGGCCCAATTTCCCTTCCTAACCACCTCATAACAATT
TACCTACCCTTCCTACAACGGAGAATCCGTCCTCCCTGGGGATTTTAAAC
TTTTGAAATCCATACCGGACTTGGCAACGATGGCAAGGCGTCTAAAGAAG
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_h24.b1 MSMg01no064_h24.b1 CHROMAT_FILE:
MSMg01no064_h24.b1 PHD_FILE: MSMg01no064_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:28 2005
         (244 letters)



>mm_chr5_14951189_14951831
          Length = 643

 Score =  391 bits (202), Expect = e-113
 Identities = 225/234 (96%), Gaps = 5/234 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   tctagaggttctttctctagatccagaacaggcacaaatgctgtctatttattagatgct 68
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 209 tctagaggttctttctctcgattcagaacaggcacaaatgctgtctatttattagatact 268

                                                                       
Query: 69  cttcttgaaactatggataattaaaatatcagttcagttaacttgtggagaaaaataact 128
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 269 cttcttgaaactatggataattaaaatatcagttcagttaa-ttgtggagaaaaataact 327

                                                                       
Query: 129 cagaacttggctatagatgttataacttactttgaatgtatgtgtgcatgtgcattgtgc 188
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cagaacttggctatatatgttataacttactttgaatgtatgtgtgcatgtgcattgtgc 387

                                                                 
Query: 189 ctgagagtatgggtgagtgagtgt-g---tgtgtgtgtgtgtgtgtgtgtgtgt 238
           |||||||||||||||||||||||| |   |||||||||||||||||||||||||
Sbjct: 388 ctgagagtatgggtgagtgagtgttgctctgtgtgtgtgtgtgtgtgtgtgtgt 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)