BAC Information

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BAC

Clone NameMSMg01-064L12
Chromosome5 (Build37)
Map Location 96,999,348 - 96,999,653
singlet/doubletsinglet
Overlap geneFras1
Upstream geneLOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
Downstream geneAnxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L12.T7 (MSMg01no064_l12.b1)MSMg01-064L12.TJ (MSMg01no064_l12.g1)
ACCAG290111AG290112
length728738
length of high quality
(start - end)
310 (46 - 355)48 (93 - 140)
definitionCHROMAT_FILE: MSMg01no064_l12.b1 PHD_FILE: MSMg01no064_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:52 2005CHROMAT_FILE: MSMg01no064_l12.g1 PHD_FILE: MSMg01no064_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTCG
AATTCAGAGATAGAGGCTATAACGTTTAAAACTAGCTATATCTTTAACGA
ATAACATCATTTTTCCTTTCTCTTTCTCTTCAAAATCTTGACTCTCGTTC
ACACTAATCAGGATTATCCCTCGTCTTGGAGGTTAACAATCACCAAGGGG
CTGTTGTCAGGTTTGAAGGTTTTCAAGGGCCTGATGTTTTTAATGCCTCA
TATATAGCATACTCAATATTTGTTTTGTAAAACCCAGAGAGCCAGTTTGG
CCAAGGTACTGTAATTAAATATAAGGTCACATTGCTTTTCCCTTGGCACT
TCTTCTTTTTAACCCTGACTCACCCAAAACAAGGTGAGGGGGAAGGCAGA
TGCTACCGTGCCAAACCGAAAACTGCAGATGGAAACTATTAATTAGGAAA
TACAAATGGACGAAATGCCACTTGTTTTGAGATAGGCTATGCTAGAAGAG
AAGCAGAGTGGAGCTGGCCAGTTGCAGAGCCTGCCAGGAACCACTAACCA
GAACTAATTCAAGCCCAGGTGATTTGGAGGCACAACTGCAAAACAAGTAG
ATAAAATTTTCTTTTGGAAAAAATTAATGAGTCTTGAAACTTTAAAACCT
CATTTGAGAAATGCAAAAGAAGCCATCTGTTTCACAGTTCACCTTTAAAA
AATAAAGAACAGAAAGACAGATTGGACC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGGTTCCTCTTGGCAGGATTTCCCA
CCCTGTCTGCCTAACTCCTCAACCAGAAAGTTTTCTTTGTGTCAAACTGG
AAGTCTTTGGCCTTCTCATGGGGCTGGAATCAAATGCAAGGCCTGGGGCT
TGCTAGGCAAGGGAAATGGCCTTTTGATTTTTCACTAAATGCCAGCTCTA
GGCTCAGTGCTGGAATATAGGATGACAAAACCCTACAGGAGCAGTCCCAA
AAAACTGGGTGCTGGCACACACAGGCCCTGAGCCTTCCAAAAAAAACTTC
TGCCAAAAAAGATTTTTTTTGCCCCCCCCCCGCTCCATCTGGAAAAGCTT
TTCCTGTCAACCACTTACCCCCCATTTTCAAAACATGAACAGGGCTCGGC
TGTACTTAAGTGACTTTTGCCATCCTCGAATTCAACCTCTCCCGTTTTGA
AAAAGAAAATGATGTGAAATTTGTGACAGCCTAATGCCATCTCTTACAGA
AGCAGGAGAAAGTGGCCAGGGGCTCTTTATAGGACCCACTGTTTACTTTG
GTCAAGGCTAACTTATCAAATATGACCCGAATCACCTCATTTAACTGCAT
ATCTGCGCCTGTCCGTGTACTTCTGCCTGTATTCCCTTTAAACTTCCTGA
AAAACAATTCGATTGCCTACCTTTCCCCGTTGACGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l12.b1 MSMg01no064_l12.b1 CHROMAT_FILE:
MSMg01no064_l12.b1 PHD_FILE: MSMg01no064_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:52 2005
         (310 letters)



>mm_chr5_96999144_96999853
          Length = 710

 Score =  569 bits (294), Expect = e-166
 Identities = 303/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagagatagaggctataacgtttaaaactagctatatctttaacgaataacatca 64
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 510 gaattcagagatagaggctataacgtctaaaactagctatatctttaacgaatagcatca 451

                                                                       
Query: 65  tttttcctttctctttctcttcaaaatcttgactctcgttcacactaatcaggattatcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tttttcctttctctttctcttcaaaatcttgactctcgttcacactaatcaggattatcc 391

                                                                       
Query: 125 ctcgtcttggaggttaacaatcaccaaggggctgttgtcaggtttgaaggttttcaaggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctcgtcttggaggttaacaatcaccaaggggctgttgtcaggtttgaaggttttcaaggg 331

                                                                       
Query: 185 cctgatgtttttaatgcctcatatatagcatactcaatatttgttttgtaaaacccagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cctgatgtttttaatgcctcatatatagcatactcaatatttgttttgtaaaacccagag 271

                                                                       
Query: 245 agccagtttggccaaggtactgtaattaaatataaggtcacattgcttttcccttggcac 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 270 agccagtttggccaaggtactgtaattaaatataaggtcgcattgcttttcccttggcac 211

                 
Query: 305 ttcttc 310
           ||||||
Sbjct: 210 ttcttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)