BAC Information

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BAC

Clone NameMSMg01-065E12
Chromosome5 (Build37)
Map Location 61,253,464 - 61,253,963
singlet/doubletsinglet
Overlap geneLOC666597
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneEG666610, LOC100041524, G6pd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065E12.T7 (MSMg01no065_e12.b1)MSMg01-065E12.TJ (MSMg01no065_e12.g1)
ACCAG290529AG290530
length673679
length of high quality
(start - end)
568 (46 - 613)500 (77 - 576)
definitionCHROMAT_FILE: MSMg01no065_e12.b1 PHD_FILE: MSMg01no065_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:44 2005CHROMAT_FILE: MSMg01no065_e12.g1 PHD_FILE: MSMg01no065_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTCAAATTTGCGGCGCTATACGACTCCTATGTCCAGAAATCCGCGG
AATTCTGTAGGTTTCCTGATTGTTCATGGGCATCTCTTTCTTTAGATTTG
GGAAGTTTTCTTATATAATTTGTTGAAGATATTTGCTAGTCCTTTAGTTG
AAAATCTTCATTCTCATCCACTCCTATTATCTGTAAGTTTGGTCTTCTCA
TTGTGTCCTGGATTTCCTGGATGTTTTGAGTTCGGATCTTTTTGCATTTT
CCATTTTCTTTGATTGTTGTGCCGATGTTCTCTATGGAATCTTCTGCACA
TGATATTCTCTCTTCCATCTCTTGTATTCTTTTGCTGATGCTCACATCTA
TGTTTCCAGATTTCTTTCCTAGGTTTTCTATCTCCAGTGTTGCCTCACTT
TGGGTTTTCTTTATTGTGTCTACTCCCTTTTTAGGTCTAGTATGGTTTTG
TTCATTTCCATCACCTGTTTGATGTGTTTTCCTGTTTTTCTTTAAGGACT
TGTAACTCTTTAGCAGTGTTCTCCTGTATTTCTTTAAATGAGTTATTAAA
ATTCTTCTTGATGTCCTCTACCATCATCATGAGATATGCTTTTAAGTTTG
GGTCTAGCTTTTCGGATGTGTTGGGGTGCCCTGGACTGGTCGAATCGGTA
GTGCTGGGTTCTGATGATGGCGT
NNCCGATGATAGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGTTGCAAGAGTACTACTTGT
GTCTTGTAGTAAATATGAGTAATCGTAATGCTTAACAATTGTATTCCTTT
AAATCTAGTTATATTAAAGAAACAGGAAGGAAACAGCTTACTTCGGAAGA
AAGCACTAAATCACTCCATTTTCACTATTTATGTAACAAAGCACACACAA
CTGTTTCATAACTCTGTGAACATCTATCTACAATCAAATTCTTGAAGGAC
ACTGTATAGAAGTTGAAGAATATTATTCGACATGAAAGAAGAGTGTTTTA
TTTCTTTTGGTTTTACTATTTGATTTCTCACCCTAATCTTACAATGGAAG
GTTAATATTTTTTACATTGAAATTCTGAAATTAGCTGAGATTTCATACTT
GAATTCTATTACAATGAACAGACCCTTCTCATATATACGTTATTGTGTGT
TTTGCTCACATGAAGGTTGATTGTTTCTAAATGTTATTTGTAAGTCTGCA
TCATTTAATCCATAAATCTTAACCAAGTTGTGAGAGTTCATGACCTGGCT
AACTGAAGGCACGCTCACATTACGCCATGGAAAAAGTAAGGAACATAATT
ATTCCCTTTAACAAGATACCGTGCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_e12.g1 MSMg01no065_e12.g1 CHROMAT_FILE:
MSMg01no065_e12.g1 PHD_FILE: MSMg01no065_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:44 2005
         (500 letters)



>mm_chr5_61253264_61254163
          Length = 900

 Score =  951 bits (492), Expect = 0.0
 Identities = 498/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagttgcaagagtactacttgtgtcttgtagtaaatatgagtaatcgtaatgcttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tttagttgcaagagtactacttgtgtcttgtagtaaatatgagtaatcgcaatgcttaac 260

                                                                       
Query: 61  aattgtattcctttaaatctagttatattaaagaaacaggaaggaaacagcttacttcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgtattcctttaaatctagttatattaaagaaacaggaaggaaacagcttacttcgg 320

                                                                       
Query: 121 aagaaagcactaaatcactccattttcactatttatgtaacaaagcacacacaactgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaagcactaaatcactccattttcactatttatgtaacaaagcacacacaactgttt 380

                                                                       
Query: 181 cataactctgtgaacatctatctacaatcaaattcttgaaggacactgtatagaagttga 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 cataactctgtgaacatctatctacaatcaaattcctgaaggacactgtatagaagttga 440

                                                                       
Query: 241 agaatattattcgacatgaaagaagagtgttttatttcttttggttttactatttgattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatattattcgacatgaaagaagagtgttttatttcttttggttttactatttgattt 500

                                                                       
Query: 301 ctcaccctaatcttacaatggaaggttaatattttttacattgaaattctgaaattagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaccctaatcttacaatggaaggttaatattttttacattgaaattctgaaattagct 560

                                                                       
Query: 361 gagatttcatacttgaattctattacaatgaacagacccttctcatatatacgttattgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagatttcatacttgaattctattacaatgaacagacccttctcatatatacgttattgt 620

                                                                       
Query: 421 gtgttttgctcacatgaaggttgattgtttctaaatgttatttgtaagtctgcatcattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgttttgctcacatgaaggttgattgtttctaaatgttatttgtaagtctgcatcattt 680

                               
Query: 481 aatccataaatcttaaccaa 500
           ||||||||||||||||||||
Sbjct: 681 aatccataaatcttaaccaa 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)