BAC Information

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BAC

Clone NameMSMg01-065N20
Chromosome5 (Build37)
Map Location 66,541,497 - 66,541,969
singlet/doubletsinglet
Overlap geneBC013481
Upstream geneKlhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik
Downstream geneLOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065N20.T7 (MSMg01no065_n20.b1)MSMg01-065N20.TJ (MSMg01no065_n20.g1)
ACCAG290973AG290974
length706711
length of high quality
(start - end)
34 (164 - 197)473 (67 - 539)
definitionCHROMAT_FILE: MSMg01no065_n20.b1 PHD_FILE: MSMg01no065_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:29 2005CHROMAT_FILE: MSMg01no065_n20.g1 PHD_FILE: MSMg01no065_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGCAGCTCCGCGGAATTCT
TTTTTTTTTCTTAAAAATTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTC
TGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAAACCAGGCTGGCCTC
GAACTCAAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGG
CGTGCGCCACCACACCCGGTTCCTGGGTTGAATTCTTAATGTCTGGCTTA
AAGGGAAGTAATTTAAACCACAAGCATATCTGAACCTTCAAACCCAATAT
GGCTACCGAATTTTTTGCAGTCGAAATTCTCCCATCATAATATTGGGTCA
AGGCTCAACAATAGAGATGGGCTACACCCCAAACCAAATGGTCTCCTTAA
CCCCCCTGAATTGGATGCTGAACAATCTTATTTCTGGCTGGGCAACAGTT
ATGATGTCAAAGCTACAGAAGCCCAGGAGTTCTGTCTTTCTTCAAGAACC
AGACTAATATTTGCGCCAATATTCTTAAAGGGAATTATTCAGTAATTATA
AATATTCTGTAAGTCCTATTAAAAAAAATTGGGGGTCTAGGAAATGGCTC
ATCCTAAGTACCTAAACTCCATCCCTACCTGAACCACATGTTCTAGGGCC
AAAACTTAACAAAACATTTTGTGTTGTGGGAACTGTTATACCAATAATCC
CTAAGA
CTGTGAGAGGCCTGGCGAGCGCCTGGTTCATAAATGGGGTGACCTATAGA
AGTGTTTCGCGAAATTCCCAGAACCCGGGAAGAGTTAAAGCCTAGAGCGA
TCTGATCTGTTGCTTTAAGCCGCACGGTGGGAAGTAGTTTGGAGACTCTT
TAATTTAGTTTTCTATTTAAAAGTGTGCGGCCAGCGAAGATGTTGTAGGC
GACTTCCTAGCCTTGTAGATTGCTACCGGGCTGTGAATGGTATTAATTTC
TGAAGTGAGCGACGCCAAGTACTTACGGAAGGTAAGGTGGACTTTTGGCA
GTTCTGACTACTGTCCCCATAGAGTCCTGACTTTTGGGAAAAAACAAACA
AACAACATCTTTCTCTCTCTATTTCTTTCCCCCTTAGTATTAATCTCTCA
TTTGATCGTCTTCCTTCTTTAGTGGGAAGTTAAAGGGTTTATAAAAAGAT
TTTTTTTTTTAAAGCGTCAGCTTTTGGAGAGCAGATAATCCTATGGTCAG
CCGCATCTTGTTTCCTGCAGACTTGAGTCTTTTTCCGTGTGTGTGTGAGT
GTGTGTGTGTGTGTGTGCGTGTGTGTGTGTATGTGTGGTATTTCCCTTTT
CGCCCCTCTTTTTTCCTCTGTGATTTTACTGCCTCCTCTTTTTACTTCGT
TTTTTTTTTCCCCCTATTTCCCTTTATTTTCCTCCTATTTTCTTTTTATG
GCCTTTTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_n20.g1 MSMg01no065_n20.g1 CHROMAT_FILE:
MSMg01no065_n20.g1 PHD_FILE: MSMg01no065_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:29 2005
         (473 letters)



>mm_chr5_66541297_66542169
          Length = 873

 Score =  899 bits (465), Expect = 0.0
 Identities = 471/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccagaacccgggaagagttaaagcctagagcgatctgatctgttgctttaagccgcacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cccagaacccgggaagagttaaagcctagagcgatctgatctgttgctttaagccgcacg 614

                                                                       
Query: 61  gtgggaagtagtttggagactctttaatttagttttctatttaaaagtgtgcggccagcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gtgggaagtagtttggagactctttaatttagttttctatttaaaagtgtgcggccagcg 554

                                                                       
Query: 121 aagatgttgtaggcgacttcctagccttgtagattgctaccgggctgtgaatggtattaa 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aagatgttgtaggtgacttcctagccttgtagattgctaccgggctgtgaatggtattaa 494

                                                                       
Query: 181 tttctgaagtgagcgacgccaagtacttacggaaggtaaggtggacttttggcagttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttctgaagtgagcgacgccaagtacttacggaaggtaaggtggacttttggcagttctg 434

                                                                       
Query: 241 actactgtccccatagagtcctgacttttgggaaaaaacaaacaaacaacatctttctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 actactgtccccatagagtcctgacttttgggaaaaaacaaacaaacaacatctttctct 374

                                                                       
Query: 301 ctctatttctttcccccttagtattaatctctcatttgatcgtcttccttctttagtggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctctatttctttcccccttagtattaatctctcatttgatcgtcttccttctttagtggg 314

                                                                       
Query: 361 aagttaaagggtttataaaaagatttttttttttaaagcgtcagcttttggagagcagat 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 313 aagttaaagggtttataaaaagatttttttttttaaagcttcagcttttggagagcagat 254

                                                                
Query: 421 aatcctatggtcagccgcatcttgtttcctgcagacttgagtctttttccgtg 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aatcctatggtcagccgcatcttgtttcctgcagacttgagtctttttccgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)