BAC Information

Click to search

BAC

Clone NameMSMg01-066F09
Chromosome5 (Build37)
Map Location 117,195,935 - 117,196,431
singlet/doubletsinglet
Overlap geneGm1684
Upstream geneLOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943
Downstream geneLOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066F09.T7 (MSMg01no066_f09.b1)MSMg01-066F09.TJ (MSMg01no066_f09.g1)
ACCAG291332AG291333
length712725
length of high quality
(start - end)
501 (47 - 547)353 (72 - 424)
definitionCHROMAT_FILE: MSMg01no066_f09.b1 PHD_FILE: MSMg01no066_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:06 2005CHROMAT_FILE: MSMg01no066_f09.g1 PHD_FILE: MSMg01no066_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTTATGACATATCCACATACACACAGATGCAGAGACACAGAGGTAA
AAATAAATCTCCAGACAAGGCCACAGGTACACAGTGTGTGGGAGGGAATG
AAGCATAAACATCACTCACAATTGAGAGTCTTTGGGTTTAGAACAAGTTA
CTAACAATTGATGAGTTGATCTGATCACCGCTCCAAGAGAGCTCCCCATC
CCAGTACAACGTGGACCCAAGATGCTTCCAGTTGCAATGCTGCTGTACCG
ACATTCTGCCCCCTCTATCATGCATAGTGAGGAAAGGGGCCCTCTCAACT
TTCTCATGACAAAAGCTGTAGAAGACCAGCAGAATGTTGGCCATCTTAAC
TGTGACAGGGGATGGGAAGGGCAGAGTATGTTAACATCAGTACTTATCAA
ACTGCTCAGGAAACTCTTCTAATTGATACCATAAATATGATATCTAGGTG
AACAACACATATTTTCTCTGTTTATACTATGCTCACATTCTTAGGGTACA
GTCACATGGTCCCATCCCTAGATGACAGAAGTATGGGGAGGTCAGTGACT
AGATAGAGAGAAAGAGAGAGAGAGAGAGAGAGATAGATAGTGAGATATAC
AGATAGATAATATCACTTGCCTTTGGTGTTTATATTCCCTTAGGTTATTC
ATATTCCATGTG
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCGAAATTCTCAGCTTCTCCTGCACCATGCCTGCCTG
CCTGGACACTGCCCTGCTCCCGCCTTGATGATATTGGACTGAACCTCTGA
CCCTGTAAACCAGCCTCAATTAAATGTTGTCCTTATAAGAGTTGCCTTGG
TCTTGGTGTCTGTTCACAGTAGTAAAACCCTAACTAAGACACAGACACAC
ATGCATATGCACAGACTTGCATGCACACCATGTACACAGACATGCACATA
CATGCACACACATATACACATGTTCATATGTACTCATGAAGGTATGCACT
TACACATATAGATACACAGGCAAACAGGAACAAATGAGCACACTTGTGCA
CACATAGGCATACAGCATGCACATACTTGAATGTACACACACACTCACTC
ACACTGAGAGAGAGAGAGAGAGAGAGAGATAGATGTGTAATGTGTTCTTC
ACTTCCAAAAAGATGCCATGAGATTGATAGCTTCCTCCCTTTTGTGTATA
GATTGGAACAAGGTACCCGCTCTTATATCGTGTACATAAGTCTTGTGCTA
CCATGATCTTGATCATTAAAATTTCCCTCTTGCCCTTGGCTTTTGTTCTA
CAGCTGTATTACTTGCAATTTTTTTCTGTGATTCTGATTCTATTTCCCCA
GTCTATATGTACTTCCTCTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_f09.b1 MSMg01no066_f09.b1 CHROMAT_FILE:
MSMg01no066_f09.b1 PHD_FILE: MSMg01no066_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:06 2005
         (501 letters)



>mm_chr5_117195732_117196632
          Length = 901

 Score =  915 bits (473), Expect = 0.0
 Identities = 491/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcttatgacatatccacatacacacagatgcagagacacagaggtaaaaataaatc 63
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttatgacatatgcacatacacactgatgcagagacacagaggtaaaaataaatc 263

                                                                       
Query: 64  tccagacaaggccacaggtacacagtgtgtgggagggaatgaagcataaacatcactcac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccagacaaggccacaggtacacagtgtgtgggagggaatgaagcataaacatcactcac 323

                                                                       
Query: 124 aattgagagtctttgggtttagaacaagttactaacaattgatgagttgatctgatcacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattgagagtctttgggtttagaacaagttactaacaattgatgagttgatctgatcacc 383

                                                                       
Query: 184 gctccaagagagctccccatcccagtacaacgtggacccaagatgcttccagttgcaatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctccaagagagctccccatcccagtacaacgtggacccaagatgcttccagttgcaatg 443

                                                                       
Query: 244 ctgctgtaccgacattctgccccctctatcatgcatagtgaggaaaggggccctctcaac 303
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgctgtacagacattctgccccctctatcatgcatagtgaggaaaggggccctctcaac 503

                                                                       
Query: 304 tttctcatgacaaaagctgtagaagaccagcagaatgttggccatcttaactgtgacagg 363
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 tttctcgtgacaaaagctgtagaagaccagcagaatgttggccatcttaactgtgacggg 563

                                                                       
Query: 364 ggatgggaagggcagagtatgttaacatcagtacttatcaaactgctcaggaaactcttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggatgggaagggcagagtatgttaacatcagtacttatcaaactgctcaggaaactcttc 623

                                                                       
Query: 424 taattgataccataaatatgatatctaggtgaacaacacatattttctctgtttatacta 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 624 taattgataccataaatatgatatctaggtgaacaacacatattttctctgtttctacta 683

                            
Query: 484 tgctcacattcttaggg 500
           |||||||||||||||||
Sbjct: 684 tgctcacattcttaggg 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)