XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
ATAACTGTGTATTGTGCTTATTCACTCAGAATTAAGAAGCTAAGATTGCA
AGTGAGTCTGTTGATTTGTCTGCCACCTTTTAATTGAGGTCCAGGCTACC
TCTTCAGAGGGAATATAACATTCACCACAGTTACAAATAACTTGTAATAT
CATCTAGTCGAAATACAGAAATCTAGCTTTATTATAGATAAAATACTGAG
ATGGGAGTCATGCTTATCTGTGAGCTCTTGAAAAGATATTGTCACATGCA
TCAGCCAAGGTTTGGCTCACCTGCATCCCATGCTAGATTCTAAGCAAGGT
CCCACACAGTTGCAGTGTTCATTAATACCAAAGGATGCTATCAGTTCTCC
CAAAAACAACAGCATGTGATTGAAAGACCATGGTATTTAAAAGTGTACAT
ATGTACATACATACATACATATGTAGCAGAGTATGGCCATATCTGTCATT
ACAGGAGGTGAGGGAGGCTTGATGCCCCCACATATGGTTATGCTAATGGG
GTGAGTGCGGCAGTGGATAAATGTTTGGGTGAGGACGTAATCCTTCCCCT
ACTTTTGTTTTAATTTGCCTCCTTTTATCCATCCCGTAATACTCTTTTTT
ATATACCTTCGCTTTTCCTTTCCTCTCCCCCGGCTGCTTTTTTTTTCCGC
CTCACCGTATTATCCTCCCCTTCTCTTT

AATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTTGCGCAAAAATTCTTTGAGAGGCCAAAGCATATCACC
CAGGCCTAGTTCTCTCTGGAAAAACATGAGGATTAAGTAACACACAGTGA
AGGCTTGTCTTTAATCTTTAGGGCTGGTCTATTTACCTTCGAGTGTTCTA
TTTGAAACACATTAAATAATCTGCATATAGGAAGTAATAGAGAAGTATGC
AAGACAGGTATATACATACTTATATATATACATACATATATATATATGTC
TTAGTAATATATGGGGCTGTTAATTTTGTGTGTGCGTGTGCCTAGCTTAT
TCTCAAATACTAAAAATTTCTAGCTAACGACATGCAGCTATTTACTGATA
ACATGAGTACCTGCTACTTTCTTTGTAGATCATCTGCTACCTACGACCCA
TATCTTAAAAAGAAACTGATTATTTGACCTGCTGACTTAACTATCTTCTA
CAGTATGCGCCCCGTTTTGTCAGAGTAAGTATTGTTATCGCTTTACGCAT
TTGCATGTTCGATTCCCTCTTGAAGCGTCTTGTTTATCGGACCCTTACCT
CCTTATTGCTATAATTGTACCCCTTGTTATCCGTTTATTACGTGCCCACC
GGCTATTTTTTCCGATATTTTCTATACCCCTCTCCTTTTATTTTAACAAC
TCTTCTTGCTAACTGCTACCCTAGCCTTGTGTTCCCAC

Query= MSMg01no066_o02.b1 MSMg01no066_o02.b1 CHROMAT_FILE:
MSMg01no066_o02.b1 PHD_FILE: MSMg01no066_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:49 2005
         (389 letters)



>mm_chr5_41267127_41267915
          Length = 789

 Score =  723 bits (374), Expect = 0.0
 Identities = 383/386 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctataactgtgtattgtgcttattcactcagaattaagaagctaagattgcaag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ggaattctataactgtgtattgtgcttattcactcagaattaagaagctaagattgcaag 530

                                                                       
Query: 64  tgagtctgttgatttgtctgccaccttttaattgaggtccaggctacctcttcagaggga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgagtctgttgatttgtctgccaccttttaattgaggtccaggctacctcttcagaggga 470

                                                                       
Query: 124 atataacattcaccacagttacaaataacttgtaatatcatctagtcgaaatacagaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atataacattcaccacagttacaaataacttgtaatatcatctagtcgaaatacagaaat 410

                                                                       
Query: 184 ctagctttattatagataaaatactgagatgggagtcatgcttatctgtgagctcttgaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctagctttattatagataaaatactgagatgggagtcatgcttatctgtgagctcttgaa 350

                                                                       
Query: 244 aagatattgtcacatgcatcagccaaggtttggctcacctgcatcccatgctagattcta 303
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aagatattgtcacatggatcagccaaggtttggctcacctgcatcccatgctagattcta 290

                                                                       
Query: 304 agcaaggtcccacacagttgcagtgttcattaataccaaaggatgctatcagttctccca 363
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 289 agcaaggtcccacacagttgcagtgttcattaatactaaaggatgctatcagttctcccc 230

                                     
Query: 364 aaaacaacagcatgtgattgaaagac 389
           ||||||||||||||||||||||||||
Sbjct: 229 aaaacaacagcatgtgattgaaagac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no066_o02.g1 MSMg01no066_o02.g1 CHROMAT_FILE:
MSMg01no066_o02.g1 PHD_FILE: MSMg01no066_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:49 2005
         (160 letters)



>mm_chr5_41132183_41132742
          Length = 560

 Score =  271 bits (140), Expect = 2e-77
 Identities = 155/160 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttgagaggccaaagcatatcacccaggcctagttctctctggaaaaacatgaggatt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tctttgagaggccaaagcatatcacccaggcctagatctctctggaaaaacatgaggatt 260

                                                                       
Query: 61  aagtaacacacagtgaaggcttgtctttaatctttagggctggtctatttaccttcgagt 120
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 261 aagtaacacacagtgaaggcttgtccttaatctttagggctggtctatttaccttcaagt 320

                                                   
Query: 121 gttctatttgaaacacattaaataatctgcatataggaag 160
           ||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 321 gttctatatgaaacatattaaataatctgcatataggaag 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)