BAC Information

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BAC

Clone NameMSMg01-067M05
Chromosome5 (Build37)
Map Location 61,883,112 - 61,883,406
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041498, LOC666597, EG666610
Downstream geneLOC100041524, G6pd2, LOC100041543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067M05.T7 (MSMg01no067_m05.b1)MSMg01-067M05.TJ (MSMg01no067_m05.g1)
ACCAG292419AG292420
length709724
length of high quality
(start - end)
295 (75 - 369)294 (72 - 365)
definitionCHROMAT_FILE: MSMg01no067_m05.b1 PHD_FILE: MSMg01no067_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:57 2005CHROMAT_FILE: MSMg01no067_m05.g1 PHD_FILE: MSMg01no067_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATGAGTACTGCCGATAGACAATTAAGATCATTAAACAAAACCAGGA
AACCTTGGTCTACTTTCATTCTCTCGCTTTTGGTAAACAATTGAGAATGT
TTGATGAGGAAAAGCAAAGCTCTGTTTAATTCTTACAAATCATTTCTCAA
GCTGAATGACACATTTTAAAATTAATGATACTATTTTATACTCTGGATAA
CATTTCCCCATGTTGATTATGTTCAATAGCGTTATATAGAAACTACTAAA
ATAGCATGGCAAGAAAAGAGGAAGGAAATTGTTTTTAAGAATCTATTCAA
GGGACCAACCCTGTGCTTTGCCCTTTTGCGATCCATTCTTTTCTGCACTG
GGACAGCCCTTAAAATACAGACATAGAGGATCAAGAGGCACCACACATGG
CTTCATCAAAAGCAGAATGTGTTCAAACTCAGCTTCTCCCTAGACCTCAA
TGGATTCCCTTTATGAGACTACAACTTTCAAATTGGCTTTAAAAAGATGA
TTCTGTCTCTGGAAAATGGAATAGCACAGAAAGGAGCAGCTTTCTGCTGC
TCTAGNTCTTTGTGGCCCTGAATTTTTTGCAGGCTTGAACCACGAACCAA
ACATTGCAGGTTTGAATCCGGAAGCCCATGGTAAAATGAACCTCCATAAT
TCTAATCCC
GATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGCTTAGCTCTGTCCTCATTTTTAATA
GGTATTTGTTTCTCTGGAGTCTAACTTCATGAGTCCTTTGTATATATTGG
ATATTAGTCCTCTATCTCGTGTAGGATTGGTAAAGATCTTTTCCCAATGT
GTTGATTGCCTTTTTTTTTTCTTATTGAGAGTATCCTTTGTCTTACAGAA
GCTTTACAATTTGATTAGGTCACATTTGTGAATTCTTGATCTTATAGCAC
AAGCCACTGATGTTCAGGAACTTTCCCCTGTGCCCATATGTTTAAGGATC
TTCCACACTTTCTCTTCTATAAGTTACAGTGTATCTGGTTTTATGGTGAG
GTCCTTGATCCACTTGGACTTGAGCTTTGTACAAGGAGATTAAGAATGTG
TTGATTTGCATTCTTCACTATGCTAACCACCAGTTGAGCCAGCACCACTT
GTTGAAAATTCTCTTTGTTCCCCTGGAGGTTTTTAGCAAAGATCAAATGA
TCATAGGGTGTTGTGTGTTCATTTTCTGGGCCTTTCATTTCTATTCTTAA
TGATTTTACTTGTTTGGCCCCTGCACCCAATTTCTTTGCAGGTTTTATCA
CAATTTGCTTCTATATGTACACCTTTGGATTTAAAAAAAGGCCGCATTCC
ATCCTGAAATCTCTTTTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_m05.b1 MSMg01no067_m05.b1 CHROMAT_FILE:
MSMg01no067_m05.b1 PHD_FILE: MSMg01no067_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:57 2005
         (295 letters)



>mm_chr5_61882912_61883606
          Length = 695

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%), Gaps = 2/296 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaagatcattaaacaaaaccaggaaaccttggtctactttcattctctcgcttttggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 attaagatcattaaacaaaaccaggaaaccttggtctactttcattctct-gcttttggt 259

                                                                       
Query: 61  aaacaattgagaatgtttgatgaggaaaagcaaagctctgtttaattcttacaaatcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaacaattgagaatgtttgatgaggaaaagcaaagctctgtttaattcttacaaatcatt 319

                                                                       
Query: 121 tctcaagctgaatgacacattttaaaattaatgatactattttatactctggataacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctcaagctgaatgacacattttaaaattaatgatactattttatactctggataacatt 379

                                                                       
Query: 181 tccccatgttgattatgttcaatagcgttatatagaaactactaaaatagcatggcaaga 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccccattttgattatgttcaatagcgttatatagaaactactaaaatagcatggcaaga 439

                                                                   
Query: 241 aaagaggaaggaaattgtt-tttaagaatctattcaagggaccaaccctgtgcttt 295
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaagaggaaggaaattgttctttaagaatctattcaagggaccaaccctgtgcttt 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)