BAC Information

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BAC

Clone NameMSMg01-068B05
Chromosome5 (Build37)
Map Location 52,951,502 - 52,952,035
singlet/doubletsinglet
Overlap geneLgi2
Upstream geneDhx15, Sod3, Gm447, LOC100041805
Downstream geneLOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068B05.T7 (MSMg01no068_b05.b1)MSMg01-068B05.TJ (MSMg01no068_b05.g1)
ACCAG292656AG292657
length692704
length of high quality
(start - end)
537 (40 - 576)504 (77 - 580)
definitionCHROMAT_FILE: MSMg01no068_b05.b1 PHD_FILE: MSMg01no068_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:23 2005CHROMAT_FILE: MSMg01no068_b05.g1 PHD_FILE: MSMg01no068_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTAAACGACTCCTATAGGTTCAGAATACGCGGAATTCCC
TCCCCTTTATCCCTCTAACGGATGATGCAGGGTGCTTTGGCAATAAAATC
AGAAAGCACTTATGAGGTACAGACACTCCCAAGTTAGCAGCAAGCTACGC
TCAACTCCGTGAGGGAGCCGGGCACGTGAGCAAGAACACGTGCTCTCTGC
TCCAGCCAGCCCAGCCTGGGCGTCTCCAAACTCAGAGCTGGCAACGTGGC
CAATCACATTTTGGGTTTGAGCAAGGGAGAAGAACGTACTGCACGGAGGC
CAGAAATTCTCCCATCTCTGCAACACTGGAAAGCTTCCAGGCAGTCTCCC
TGCTCTCTCTTACAGTGCCCTGTGCCTTGCTGGCCATACTTTTGTTAATA
CCATAGTCCCTAGAGGAAAGCCCATCGTTTTACATCTCTATGTTTTAGTT
TTTGCTGAGGAAGGAAGAGTTCCATTAAGCACGGCTTCCAGAAACCTTGA
GTTCATTTTGTCCTATACAGCCTCCTAGCTGGGCAAGTGATAACACGGTA
GAGGTGTTCTCAAGCTCCGGACAAGGCTGAGAAGCATAAAGGGCTGTATC
ACGAGCAAGGCTGGCTTGCTCTGGTCTGATATGGTACAGGGCTTACAGCA
GACACCTTGTATCAATGACATTGACTAAGCCATAAACTCTCC
NNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACCTTACACCAGTCAGAATGGCT
AAGATCAAAACCTCAGATGACAAAACATGTTGGAGAGGATGTAGAGAAAG
AGGAACACTTCTCCATTGCTGGTGGGATTGAAAACTGGTACAACCACTCT
GGAAACAAATCTGAAGGAAGAAAATTGGAAACAGATCTACCGTAAGACCC
AGCTATACCACTCTTAGGAATATACCCAAAAGATGGCCCACCATGCCACA
GGAGCACATGTTCCACTATGTTCATAGTGGCCTTATTTGTGATAGCCAGA
AGCTGGAAACAACCTAGAAGCCCCATGATAGAAGAATGGATACAGAAAAT
GTGGTCCATTTACACAATGGAATGTGACTCAGCTACTAAGAAGGAGGACA
TCCTTACTTTTGCAAGCAAATGGATGGAACTAGAAAATATCATCCTGAGT
GAGGTAACTCAGACATAAAAGGAAATACATGGTATGTACTCACTAATAAA
TGGATATTAGCCAAAAGAAAAAAGAAAAGAAAAAGAAAAAGAAAAGGAAA
AAAAAAACCATACTGAATACACAAGATACTGTCCACAAACTCAAAAGGCT
CAACCAAGTGAAGTGGCCAAGTGAGGATACCTCAGTCTTACTTGGGAGAG
AGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_b05.b1 MSMg01no068_b05.b1 CHROMAT_FILE:
MSMg01no068_b05.b1 PHD_FILE: MSMg01no068_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:23 2005
         (537 letters)



>mm_chr5_52951299_52952235
          Length = 937

 Score =  959 bits (496), Expect = 0.0
 Identities = 525/536 (97%), Gaps = 4/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccctccccttta--tccctctaacggatgatgcagggtgctttggcaataaaatc 61
           ||||||||||||||| |  ||  |||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccctccccttaacatc--tctaacggatgatgcagggtgctttggcaataaaatc 261

                                                                       
Query: 62  agaaagcacttatgaggtacagacactcccaagttagcagcaagctacgctcaactccgt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agaaagcacttatgaggtacagacactcccaagttagcagcaagctacgctcaactccgt 321

                                                                       
Query: 122 gagggagccgggcacgtgagcaagaacacgtgctctctgctccagccagcccagcctggg 181
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gagggagctgggcacgtgagcaagaacacgtgctctctgctccagccagcccagcctggg 381

                                                                       
Query: 182 cgtctccaaactcagagctggcaacgtggccaatcacattttgggtttgagcaagggaga 241
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 382 tgtctccaaactcagagctggcaacgtggccaatcacatcttgggtttgagcaagggaga 441

                                                                       
Query: 242 agaacgtactgcacggaggccagaaattctcccatctctgcaacactggaaagcttccag 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agaacgtactgcacggaggccagaaattctcccatctctgcaacactggaaagcttccag 501

                                                                       
Query: 302 gcagtctccctgctctctcttacagtgccctgtgccttgctggccatacttttgttaata 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcagtctccctgctctctcttacagtgccctgtgccttgctggccatacttttgttaata 561

                                                                       
Query: 362 ccatagtccctagaggaaagcccatcgttttacatctctatgttttagtttttgctgagg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccatagtccctagaggaaagcccatcgttttacatctctatgttttagtttttgctgagg 621

                                                                       
Query: 422 aaggaagagttccattaagcacggcttccagaaaccttgagttcattttgtcctatacag 481
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 622 aaggaagagttccattaagcacagcttccagaaaccttgagttcgttttgtcctatacag 681

                                                                   
Query: 482 cctcctagctgggcaagtgataacacggtagaggtgttctcaagctccggacaagg 537
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 682 cctcctagctgggcaagtgataacaaggtagaggtgttctcaagctccggacaagg 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)