Query= MSMg01no068_d23.b1 MSMg01no068_d23.b1 CHROMAT_FILE:
MSMg01no068_d23.b1 PHD_FILE: MSMg01no068_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:36 2005
(429 letters)
>mm_chr5_125400730_125401558
Length = 829
Score = 694 bits (359), Expect = 0.0
Identities = 406/429 (94%), Gaps = 13/429 (3%)
Strand = Plus / Minus
Query: 1 agcatctctctgatgtgtcggctcatggtgcttccgtctggtggtattgtcatttgtacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agcatctctctgatgtgtcggctcatggtgcttccgtctggtggtattgtcatttgtacg 456
Query: 61 tcctgtcaccttggtagaggtgttcatgggaacaacacccttactctttggagggtgcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcctgtcaccttggtagaggtgttcatgggaacaacacccttactctttggagggtgcca 396
Query: 121 acatcttgtactgcttggctttggccccctaactgcatagactgggctgattttgttggc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 395 acatcttgtactgcttggctttggccccctaactgcatagaccgggctgattttgttggc 336
Query: 181 accgtgccatccaaggtcaggaagaatgaatgcccccagccagcttggctttctttccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 accgtgccatccaaggtcaggaagaatgaatgcccccagccagcttggctttctttccct 276
Query: 241 tctttacaaaggtcctttgctgtctcaagacagatgtgcaaactccacaccttgagattt 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tctttacaaaggtccttcactgtctcaagacagatgtgcaaactccacaccttgagattt 216
Query: 301 gtgacgtgtccgcaagcacatgcacacacacatatacacacacatatatacatacataac 360
|||| ||||| |||| |||||||||||||||||||| |||||||| |||
Sbjct: 215 gtgaggtgtctgcaaacacatgcacacacacatata------------tacatacaaaac 168
Query: 361 acatgtgtgaaatagtgtggcttaatggttttgtggcgtacatttaactttttttttatt 420
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct: 167 acatgtgtgaaatagtgtggtttaatggttttgtggtgtacatttaacttttttttt-tt 109
Query: 421 taacagagg 429
|| ||||||
Sbjct: 108 tagcagagg 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_d23.g1 MSMg01no068_d23.g1 CHROMAT_FILE:
MSMg01no068_d23.g1 PHD_FILE: MSMg01no068_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:37 2005
(394 letters)
>mm_chr5_125260614_125261407
Length = 794
Score = 675 bits (349), Expect = 0.0
Identities = 383/395 (96%), Gaps = 4/395 (1%)
Strand = Plus / Plus
Query: 1 agcagttgtaagcagctgggcatggctgcacatgcctgtaactgcagcataggagggggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagttgtaagcagctgggcatggctgcacatgcctgtaactgcagcataggagggggt 260
Query: 61 agaccagtcagaatcatgagagatcctgtgtcaaggcgatatggtgatgggtgatagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaccagtcagaatcatgagagatcctgtgtcaaggcgatatggtgatgggtgatagaag 320
Query: 121 aagacactcagttctttctctggctcctgtatgcacgtgtgcccatgggtacattcacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacactcagttctttctctggctcctgtatgcacgtgtgcccatgggtacattcacct 380
Query: 181 acacactcacatgcctctctctctctctctttttctctctctctcattctgtctgcaatg 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 acacactcacatgcctctctctctctct--ttttctctctctctcattctgtctgcaatg 438
Query: 241 ctgaagatggattctatgtgcctcattcggccgaggcatgtgctccaccactgattcatc 300
||||||||||| | | ||||||||||||||||||||||||||||||||||||| || |
Sbjct: 439 ctgaagatggagccca-gtgcctcattcggccgaggcatgtgctccaccactgagccacc 497
Query: 301 gaaccatttcctgcaattgcatgtcctttaaaaaaaaa-gattttagtttttaattatga 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 498 gaaccatttcctgcaattgcatgtcctttaaaaaaaaaagattttagtttttaattatga 557
Query: 360 gtctgtgtatgtgctcatggctgcatttcccacag 394
|||||||||||||||||||| |||| |||||||||
Sbjct: 558 gtctgtgtatgtgctcatgggtgcagttcccacag 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
