Query= MSMg01no068_h19.b1 MSMg01no068_h19.b1 CHROMAT_FILE:
MSMg01no068_h19.b1 PHD_FILE: MSMg01no068_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:56 2005
(279 letters)
>mm_chr5_122942981_122943659
Length = 679
Score = 503 bits (260), Expect = e-147
Identities = 269/272 (98%)
Strand = Plus / Plus
Query: 1 agtgccatggatgagtgggtaaaggcacttgctatccaagtctgatgatctgggttcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgccatggatgagtgggtaaaggcacttgctatccaagtctgatgatctgggttcaag 260
Query: 61 tttcacactcacaatgcaaggatctgataagcgacttctcaaagttgtcctctgacctcc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tttcacactcacaatgcaaggatctgataaccgacttctcaaagttgtcctctgacctcc 320
Query: 121 atatagcaatgcccatgtcacatatgcacataagctccctcccactttccagggccaagt 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacagcaatgcccatgtcacatatgcacataagctccctcccactttccagggccaagt 380
Query: 181 cctgataaatgtcagtggcaattttatcaaaaacctgccaacctgaatgactgaatctgg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 cctgataaatgtcagtggcaattttatcaaaaacctgccaacctgaatgactaaatctgg 440
Query: 241 gaggtggaccttgctttacatggggggggggg 272
||||||||||||||||||||||||||||||||
Sbjct: 441 gaggtggaccttgctttacatggggggggggg 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no068_h19.g1 MSMg01no068_h19.g1 CHROMAT_FILE:
MSMg01no068_h19.g1 PHD_FILE: MSMg01no068_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:56 2005
(448 letters)
>mm_chr5_123086579_123087426
Length = 848
Score = 756 bits (391), Expect = 0.0
Identities = 433/451 (96%), Gaps = 8/451 (1%)
Strand = Plus / Minus
Query: 6 tctaagatgtttagttctaggagacagagtggaaacaccagcagagaactggttcagcta 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 tctaagatgtttagttctaggagacagagtggaaacaccagcagagaactggttcagcta 789
Query: 66 cccaagatgggcttctttgtgtttcgactgcttgcatttgggattaaggagaaaataaag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cccaagatgggcttctttgtgtttcgactgcttgcatttgggattaaggagaaaataaag 729
Query: 126 gtaacaggttgttgccctttgcaatagtgcggcgatgacgtcacgaaacgacgtcaccac 185
||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||
Sbjct: 728 gtaacaggttgttgccctttgcaatagcgcggtgatgacgtcacgaaatgacgtcaccac 669
Query: 186 tggagg-ttttac-------ctccctcctgcagcagctggcgttggactcttcctccttc 237
||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aggaggtttttacctccccgctccctcctgcagcagctggcgttggactcttcctccttc 609
Query: 238 caactctgtccctgtcaacactgacgtggctgcattgatgactgcccctcaggtgtgtca 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 caactccgtccctgtcaacactgacgtggctgcattgatgactgcccctcaggtgtgtca 549
Query: 298 tgtgtcagcacagttcattgtggccggccggcgagagcaatgccaagtggcattttccct 357
|||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct: 548 tgtgtcagcacagttcattgtggccggccggcgagagctatgccaagtggtactttccct 489
Query: 358 actctgtggctccgtggcggatcctggcagcaatcctctcagccttccctcttctgcctc 417
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 488 actctgtggctccgtggcggatcctggcagcaatcctctcagccttccctcctccgcctc 429
Query: 418 taatccagagttcttaggtcctgctgctcag 448
|||||||||||||||||||||||||||||||
Sbjct: 428 taatccagagttcttaggtcctgctgctcag 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
