Query= MSMg01no068_l22.b1 MSMg01no068_l22.b1 CHROMAT_FILE:
MSMg01no068_l22.b1 PHD_FILE: MSMg01no068_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:16 2005
(331 letters)
>mm_chr5_12399672_12400401
Length = 730
Score = 567 bits (293), Expect = e-166
Identities = 314/321 (97%), Gaps = 1/321 (0%)
Strand = Plus / Plus
Query: 8 gaattcaaagcagaatagcccccggcttgagtagtttcggatccacagctatgacacact 67
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 208 gaattcaaagcagaatagcccccggcttgagtagttttggatccacagctatgacacact 267
Query: 68 gactacagtgtgctaagaggtcgcacattaggaagtcacatggtagaaatttcaactgaa 127
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 268 gactacagtgtgctaagaggt-gcatattaggaagtcacatggtagaaatttcaactgaa 326
Query: 128 gtctcattacttctagaaagggtgaacattttcctccttggtgatgccaacatgtacctt 187
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 327 gtctcattacttctagaaagggcgaacattttcctccttggtgataccaacatgtacctt 386
Query: 188 agaaaggcggtgtgttttgtaggagatgttgaaatttgaagctaggtgaggttgaactaa 247
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 387 agaaaggcggtgtgttttgtaggagatgatgaaatttgaagctaggtgaggttgaactaa 446
Query: 248 ggcccacatgtcagtgataccttccagaagcataaattaactttcttatgttacattcat 307
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 447 ggcccacatgtcagtgataccttccagaagcataaattaactttcatatgttacattcat 506
Query: 308 gaattgtatttagctatgatc 328
|||||||||||||||||||||
Sbjct: 507 gaattgtatttagctatgatc 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 730
Length adjustment: 9
Effective length of query: 322
Effective length of database: 721
Effective search space: 232162
Effective search space used: 232162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_l22.g1 MSMg01no068_l22.g1 CHROMAT_FILE:
MSMg01no068_l22.g1 PHD_FILE: MSMg01no068_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:17 2005
(296 letters)
>mm_chr5_12568251_12568946
Length = 696
Score = 557 bits (288), Expect = e-163
Identities = 294/296 (99%)
Strand = Plus / Minus
Query: 1 ctaattttgttgatgagagaactggttctgagaattagttattgagtagggtattgaaga 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 496 ctaattttgttgatgagagaactggttctgagaattagttattgagtaggatattgaaga 437
Query: 61 ttgactctttagtgttgtgtaccaaaaattctcatttgaaatcccagattcccagttgaa 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 436 ttgactctttagtgttgtgtaccaaaaattctcgtttgaaatcccagattcccagttgaa 377
Query: 121 atcccttttcaaagtttgtgattgtcatattaaatgtatgtcttatgccttggacagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atcccttttcaaagtttgtgattgtcatattaaatgtatgtcttatgccttggacagaaa 317
Query: 181 cacaactcaactgccccattgtttttgttttgttttgtgtttttgtgagttaaaggataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cacaactcaactgccccattgtttttgttttgttttgtgtttttgtgagttaaaggataa 257
Query: 241 gaatactcacattcaatcttcattctcctaagaccaggcaaaaccaatgacttcga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gaatactcacattcaatcttcattctcctaagaccaggcaaaaccaatgacttcga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
