BAC Information

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BAC

Clone NameMSMg01-068N18
Chromosome5 (Build37)
Map Location 86,262,991 - 86,263,307
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068N18.T7 (MSMg01no068_n18.b1)MSMg01-068N18.TJ (MSMg01no068_n18.g1)
ACCAG293255AG293256
length722727
length of high quality
(start - end)
322 (47 - 368)424 (75 - 498)
definitionCHROMAT_FILE: MSMg01no068_n18.b1 PHD_FILE: MSMg01no068_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:26 2005CHROMAT_FILE: MSMg01no068_n18.g1 PHD_FILE: MSMg01no068_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGTATTCTCTCTCAAGACCTCTGTGGCCCTCAGGTGGAAGCTT
ATGCGTAACTCACTATTGGATCCTTCCCAGCAGTCTCACCAGTCTGAGAT
GGCATGCGGGGAAGACAACAGTTGTTGATTCCAATCATTTCTCTTTAAGT
ATTGAGTTGATTATAAATTTAAAATAAATCTAAACAACATGCTGCTTGAT
TGATTGACTTCCATCATTCGACTCATGTAATTTAAGAAGTGTTCTGCGCA
CACTGTCTTCACATTCTCATGAATGAGATCCATTTCTGTATTTCAGTAGA
GTGCTTAAATTATCTTTTTGTATCCTTGGCTCCACCATTCACCCTTAAAC
ATAACGTTATTCCCAATCGGCATGTCTCTTTAATGAAATGAACTCTCTGG
GTGTCTGATGTGAGTTACAGAGTTAGTGGAATAAAGTGAATATAGAAAAA
AAATGGAGTTTCACAACTGAGAAATCTTGAATGGCTGAGAATCACCTAAA
AAAATGTTCAAAGTCCTTAGTGATCAGAGAAATGCAAATCAAAATGACCC
TGAGATTCTACCTTACACCCATTAAAATGGCTAAGATCAAAACCTCAGGT
CACAACACATGTTAACCAGGATGTGAAGAAAGAGGAACACTCCTCCCTTG
CTGGTGAAATTGCAAACTGGAT
CACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAGCACATCAAAACCGATTATCCA
GAGACTGTCCCACCTGGGGATCCATTTCATATACAACTACCAAACCCAGA
CACTATTGTGAATGCCAACAAGAGCTTGCTGACAGGAACCTGATATAGTT
GTCTCCTGAGAAGCTCTGCAGTGTCTGACAAATACAGAAGTGAATGCTCA
CAGCCACACATTGAACAGAGCACAGTGCCCCCAATGAAGGAACTAGGGAA
AGTACCCAAGATGCTGAAGTGGTTTGCAGCCCCATAGGAGGAACAACAAT
ATGAACTAACCAGTACCTCTAGAGCTCCCTGCCACTAAACCACCAACCAA
AGAAAACACATGGCAGGACTCATGGCTCTAGCTGCATGTGTAAGCCCCAG
TATAGAAGAATGCCAGGGCCAAGAAGTGGGAGTGGATGTGTTGGTGAGCA
GGGGGGGAGGCGATTATTTCTCCCTTTTTTTTCTATTTCTCTCTCATTTC
TTCTACTTTTATTTTCTACTTCTATTCTATACCTTCTTTTCTTTTTTTTC
CTTCATTTTCTTTTTTTCCTTTCTCTTTTTATTTTTTTTATCTCCTTTTT
TCTATTCCTCCTTACTTATCTCTTTTCTCTCCGTTATTCTCATTTCTCTC
CATCTCCCCTTTTTTTTTCACCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_n18.b1 MSMg01no068_n18.b1 CHROMAT_FILE:
MSMg01no068_n18.b1 PHD_FILE: MSMg01no068_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:26 2005
         (322 letters)



>mm_chr5_86262787_86263510
          Length = 724

 Score =  559 bits (289), Expect = e-164
 Identities = 310/317 (97%), Gaps = 2/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcca-gtattctctctcaagacctctgtggccctcaggtggaagcttatgcgtaac 63
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagtattctctctcaagacctctgtggccctcaggtggaagcttatgcgtaac 264

                                                                       
Query: 64  tcactattggatccttcccagcagtctcaccagtctgagatggcatgcggggaagacaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcactattggatccttcccagcagtctcaccagtctgagatggcatgcggggaagacaac 324

                                                                       
Query: 124 agttgttgattccaatcatttctctttaagtattgagttgattataaatttaaaataaa- 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 325 agttgttgattccaatcatttctctttaagtattgagttgattataaatttaaaaaaaaa 384

                                                                       
Query: 183 tctaaacaacatgctgcttgattgattgacttccatcattcgactcatgtaatttaagaa 242
           ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 tctaaacaaaatgctgcttgattgattgacttccatcattcgactcatgtagtttaagaa 444

                                                                       
Query: 243 gtgttctgcgcacactgtcttcacattctcatgaatgagatccatttctgtatttcagta 302
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 445 gtgttctgcgcacactgtcttcacattctcatgaatgagaaccatttctatatttcagta 504

                            
Query: 303 gagtgcttaaattatct 319
           |||||||||||||||||
Sbjct: 505 gagtgcttaaattatct 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 724
Length adjustment: 9
Effective length of query: 313
Effective length of database: 715
Effective search space:   223795
Effective search space used:   223795
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)